initial import of currently used scripts

bin/qlogin_wrapper

@@ -0,0 +1,5 @@
+#!/bin/sh
+# $Id: qlogin_wrapper 175 2010-09-15 15:34:28Z kasper $
+HOST=$1
+PORT=$2
+/usr/bin/ssh -XAq -p $PORT $USER@$HOST

bin/suspend.sh

@@ -0,0 +1,25 @@
+#!/usr/bin/ksh
+# $Id: suspend.sh 365 2013-11-18 09:58:17Z kasper $
+# This script should be added as the SUSPEND_METHOD in the
+# queue definition with a $job_pid, $job_id, and $job_owner arguments.
+# e.g. script.sh $job_pid $job_id $job_owner
+
+if [ -z "$3" ]
+then
+    echo "Usage: $0 \$job_pid \$job_id \$job_owner"
+    exit 1
+fi
+
+stat=`pgrep -g $1`
+if [ ! -z "$stat" ]
+then
+    #echo "Sending $sig to $1" >> ~$3/qdel_log.log
+    /usr/bin/pkill --signal SIGTSTP -g $1
+else
+    echo "Process $1 not found for job $2" >> ~$3/qdel_log.log
+    echo "Unable to suspend." >> ~$3/qdel_log.log
+    exit 1
+fi
+
+#uncomment the following for debugging
+#echo "Suspending Job $2 " >> ~$3/qdel_log.log

bin/term.sh

@@ -0,0 +1,30 @@
+#!/usr/bin/ksh
+# $Id: term.sh 364 2013-11-18 09:55:05Z kasper $
+# This script should be added as the TERMINATE_METHOD in the
+# queue definition with $job_pid, $job_id, $job_owner, and interval arguments.
+# e.g.  script.sh $job_pid $job_id $job_owner 90
+
+if [ -z "$4" ]
+then
+    echo "Usage: $0 \$job_pid \$job_id \$job_owner interval" 
+    exit 1
+fi
+
+#echo "Term script Running on: $USER $1 $2 $3 $4" >> ~$3/qdel_log.log
+#echo `pgrep -g $1` >> ~$3/qdel_log.log
+
+for sig in 2 15 9
+do
+    stat=`pgrep -g $1 -u $3`
+    if [ ! -z "$stat" ]
+    then
+        #echo "Sending $sig to $1" >> ~$3/qdel_log.log
+        /usr/bin/pkill --signal $sig -g $1
+        sleep $4
+    else
+        break
+    fi
+done
+
+#uncomment the following for debugging
+#echo "Job $2 killed." >> ~$3/qdel_log.log

epilog.d/99-rm_empty_logs.sh

@@ -0,0 +1,11 @@
+#! /bin/bash
+# $Id: epilog 181 2010-09-17 15:55:28Z kasper $
+
+## Delete the STDOUT and STDERR files (.o and .e) if they are empty
+##  ( we do not want to delete non-empty files, they may contain useful
+##    troubleshooting or debug information ... )
+##
+[ -r $SGE_STDOUT_PATH -a -f $SGE_STDOUT_PATH ] && [ ! -s $SGE_STDOUT_PATH ] && rm -f $SGE_STDOUT_PATH
+[ -r $SGE_STDERR_PATH -a -f $SGE_STDERR_PATH ] && [ ! -s $SGE_STDERR_PATH ] && rm -f $SGE_STDERR_PATH
+
+exit 0