adding original examples

examples/jobs/array_submitter.sh

@@ -0,0 +1,106 @@
+#!/bin/sh
+#
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+#
+# This sample consists of three scripts belonging toghether
+#
+#    array_submitter.sh
+#    step_A_array_submitter.sh
+#    step_B_array_submitter.sh
+#
+# The number <n> passed as an argument to the interactively started 
+# array_submitter.sh is used to specify the the size of the two array 
+# jobs step_A_array_submitter.sh/step_B_array_submitter.sh which are 
+# submitted. Each single job of array job B is not scheduled before 
+# array job A has not passed the section where qalter is used to release 
+# the succesor task. Refer to qsub(1) for more information about array
+# jobs.
+#  
+# This is a typical scenario in DCC industry where schemes like this
+# are used to control sequence of large rendering jobs.
+# Note that it is necessary that all hosts where A jobs are started
+# must be submit hosts to allow the qalter happen.
+#
+
+#$ -S /bin/sh
+
+if [ x$SGE_ROOT = x ]; then
+   SGE_ROOT=/usr/SGE
+fi
+if [ ! -d $SGE_ROOT ]; then
+   echo "error: SGE_ROOT directory $SGE_ROOT does not exist"
+   exit 1
+fi
+
+ARC=`$SGE_ROOT/util/arch`
+
+QSUB=$SGE_ROOT/bin/$ARC/qsub
+QALTER=$SGE_ROOT/bin/$ARC/qalter
+
+if [ ! -x $QSUB ]; then
+   echo "error: cannot execute qsub command under $QSUB"
+   exit 1
+fi
+
+if [ ! -x $QALTER ]; then
+   echo "error: cannot execute qalter command under $QALTER"
+   exit 1
+fi
+
+tasks=0
+
+while [ "$1" != "" ]; do
+   case "$1" in
+   [0-9]*)
+      tasks=$1
+      shift 
+      ;;
+   esac
+done
+
+if [ $tasks = 0 ]; then
+   echo "usage: array_submitter.sh <number_of_tasks>"
+   exit 1
+fi
+
+# submit step A jobarray
+jobid_a=`$QSUB -t 1-$tasks -r y -N StepA $SGE_ROOT/examples/jobs/step_A_array_submitter.sh | cut -f3 -d" "|cut -f1 -d.`
+echo "submission result: jobid_a = $jobid_a"
+
+# submit step B jobarray with hold state
+jobid_b=`$QSUB -t 1-$tasks -h -r y -N StepB $SGE_ROOT/examples/jobs/step_B_array_submitter.sh | cut -f3 -d" "|cut -f1 -d.`
+echo "submission result: jobid_b = $jobid_b"
+
+# put jobid of step B into context of step A
+$QALTER -ac succ=$jobid_b $jobid_a

examples/jobs/env-tester.sh

@@ -0,0 +1,36 @@
+#!/bin/sh
+#$ -S /bin/sh
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+echo ------------------------------------
+env
+echo ------------------------------------

examples/jobs/jobnet_submitter.sh

@@ -0,0 +1,77 @@
+#!/bin/sh
+#
+#
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+QSUB=$SGE_ROOT/bin/$ARC/qsub
+name_base=Net
+hold=""
+jobs=5
+
+while [ "$1" != "" ]; do
+   case "$1" in
+   -N)
+      shift 
+      name_base=$1
+      shift 
+      ;;
+   -h)
+      hold=-h
+      shift 
+      ;;
+   [0-9]*)
+      jobs=$1
+      shift 
+      ;;
+   esac
+done
+
+echo "going to submit $jobs jobs"
+
+jobid=0
+REQUEST=""
+
+i=1
+while [ $i -le $jobs ]; do
+   if [ $i -ne 1 ]; then
+      opt="-hold_jid $jobid"
+   fi
+   
+   jobid=`$QSUB $REQUEST -r y -N $name_base$i $hold $opt $SGE_ROOT/examples/jobs/sleeper.sh 10 | cut -f3 -d" "`
+   if [ $i -ne 1 ]; then
+      echo submitted job \#$i name = $name_base$i with jobid $jobid and $opt
+   else
+      echo submitted job \#$i name = $name_base$i with jobid $jobid
+   fi
+   i=`expr $i + 1`
+done

examples/jobs/matlab_script.sh

@@ -0,0 +1 @@
+../../local/examples/jobs/matlab_script.sh

examples/jobs/pascal.sh

@@ -0,0 +1,107 @@
+#!/bin/sh
+#
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+#
+# This is a sample script to demonstrate use of job dependencies. The 
+# sample submits one job for each node in the pascal triangle: 
+#
+#                        1               depth 1
+#                       / \
+#                      1   1             depth 2
+#                     / \ / \
+#                    1   2   1           depth 3
+#                   / \ / \ / \
+#                  1   3   3   1         depth 4
+#                  
+#                  :   :   :   :
+#
+# Data exchange between jobs is done via files in jobnet_dir. 
+#
+# Usage: pascal.sh <depth of pascal triangle>
+
+jobnet_dir=$HOME/pascal_jobnet
+
+if [ $# -ne 1 ]; then
+   echo "usage: pascal.sh <depth of pascal triangle>" >&2
+   exit 1
+fi 
+n=$1
+i=1
+
+mkdir $jobnet_dir
+rm $jobnet_dir/*
+
+while [ $i -le $n ]; do
+   j=1
+   while [ $j -le $i ]; do
+      prev_line=`expr $i - 1` 
+
+      # specify own jobname
+      submit_args="-N P${i}_${j}"
+
+      if [ $j -gt 1 -a $j -lt $i ]; then
+         depend1=P${prev_line}_`expr ${j} - 1`
+         depend2=P${prev_line}_${j}
+         depend="$depend1 $depend2"
+         submit_args="$submit_args -hold_jid $depend1,$depend2"
+      elif [ $j -gt 1 ]; then
+         depend=P${prev_line}_`expr ${j} - 1`
+         submit_args="$submit_args -hold_jid $depend"
+      elif [ $j -lt $i ]; then
+         depend=P${prev_line}_${j}
+         submit_args="$submit_args -hold_jid $depend"
+      fi   
+
+      echo "qsub -j y -o $jobnet_dir $submit_args -- $jobnet_dir $depend"
+      qsub -r y -j y -o $jobnet_dir $submit_args -- $jobnet_dir $depend << EOF 
+#!/bin/sh
+#$ -S /bin/sh
+result=0
+jobnet_dir=\$1
+shift
+while [ \$# -gt 0 ]; do
+   depend=\$1
+   shift
+   to_add=\`cat \$jobnet_dir/DATA_\$depend\`
+   result=\`expr \$result + \$to_add\`
+   echo "\$REQUEST: adding \$to_add found in \$jobnet_dir/DATA_\$depend results in \$result"  
+done
+if [ \$result = 0 ]; then
+   result=1
+fi
+echo \$result > \$jobnet_dir/DATA_\$REQUEST 
+EOF
+      j=`expr $j + 1`
+   done
+   i=`expr $i + 1`
+done

examples/jobs/periodic_sleeper.sh

@@ -0,0 +1 @@
+../../local/examples/jobs/periodic_sleeper.sh

examples/jobs/pminiworm.sh

@@ -0,0 +1,79 @@
+#!/bin/sh
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+#
+#
+
+# -------------------------------------------
+# --          use Bourne shell             --
+#$ -S /bin/sh
+# --             our name                  --
+#$ -N PMiniWorm
+# -------------------------------------------
+# -- send mail if the job exits abnormally --
+#$ -m a
+# -------------------------------------------
+# --     What to redirect to where         --
+#$ -e /dev/null
+#$ -o /dev/null
+
+QSUB=$SGE_ROOT/bin/$ARC/qsub
+SLEEP=120
+
+echo using $QSUB as qsub command
+
+if [ "$1" = "" ]; then
+   arg=1
+else
+   arg=`expr $1 + 1`
+fi
+NAME=W$arch$arg
+
+# started by SGE or manually 
+if [ "$JOB_ID" = "" ]; then
+   echo "submitting $NAME"
+else
+   sleep $SLEEP
+fi
+
+# first try
+# cmd="$QSUB -N $NAME -l arch=$arch $SGE_ROOT/examples/jobs/pminiworm.sh $arg"
+cmd="$QSUB -N $NAME $SGE_ROOT/examples/jobs/pminiworm.sh $arg"
+$cmd
+
+# repeat until success 
+while [ "x$?" != "x0" ]; do
+   echo "pminiworm.sh: qsub failed - retrying .." >&2
+   sleep $SLEEP
+   $cmd
+done

examples/jobs/simple.sh

@@ -0,0 +1,47 @@
+#!/bin/sh
+#
+#
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+# This is a simple example of a SGE batch script
+
+# request Bourne shell as shell for job
+#$ -S /bin/sh
+
+#
+# print date and time
+date
+# Sleep for 20 seconds
+sleep 20
+# print date and time again
+date

examples/jobs/simple_conda_test.sh

@@ -0,0 +1 @@
+../../local/examples/jobs/simple_conda_test.sh

examples/jobs/sleeper.sh

@@ -0,0 +1,63 @@
+#!/bin/sh
+#
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+#
+# Usage: sleeper.sh [time [do_echo]]
+#        default for time is 60 seconds
+#        default for do_echo is 1 (=true)
+#
+
+# -- our name ---
+#$ -N Sleeper
+#$ -S /bin/sh
+
+
+time=60
+do_echo=1
+if [ $# -ge 1 ]; then
+   time=$1
+fi
+if [ $# -ge 2 ]; then
+   do_echo=$2
+fi
+
+if [ $do_echo -ne 0 ]; then
+   /bin/echo Here I am: `hostname`. Sleeping now at: `date`
+fi
+
+sleep $time
+
+if [ $do_echo -ne 0 ]; then
+   echo Now it is: `date`
+fi

examples/jobs/ssession.sh

@@ -0,0 +1,187 @@
+#!/bin/sh
+#$ -S /bin/sh
+#$ -pe make 1
+#$ -N SSession
+#$ -v PATH
+
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2009 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+
+ARCH=`$SGE_ROOT/util/arch`
+ECHO="$SGE_ROOT/utilbin/$ARCH/echo_raw -e"
+
+ssession_logging_enabled="false"       # is logging enabled?
+ssession_logfile="/tmp/ssession.log"   # logfile
+tfile="taskfile.txt"                   # default taskfile name if not other specified
+mfile=""                               # makefile name
+isource="tfile"                        # type of onput "tfile" or "mfile"
+
+ssession_show_usage() 
+{
+   echo "usage: ssession [ taskfile | -mf makefile ]"
+   echo 
+   echo "   If there is neither a taskfile nor a makefile specified then"
+   echo "   this script assumes that there is taskfile named taskfile.txt"
+   echo "   in the current working directory."
+   echo
+   echo "   taskfile    - taskfile containing the tasks to be executed in the session"
+   echo "   makefile    - makefile containing the tasks an depedency definition"
+}
+
+# add start rule to makefile
+ssession_makefile_add_all()
+{
+   taskfile=$1
+   makefile=$2
+
+   start="all:" 
+   line_i=1
+   max=`wc -l $taskfile|cut -c 1-8` 
+   while [ $line_i -le $max ]; do
+      line=`head -$line_i $taskfile | tail -1` 
+
+      start=`echo $start task${line_i}`  
+      line_i=`expr $line_i + 1`
+   done
+
+   echo $start >>$makefile
+   echo "" >>$makefile
+
+   unset makefile
+   unset start
+   unset line_i
+}
+
+# add one rule for each task in taskfile
+ssession_makefile_add_task()
+{
+   taskfile=$1
+   makefile=$2
+
+   line_i=1
+   max_lines=`wc -l $taskfile|cut -c 1-8` 
+   while [ $line_i -le $max_lines ]; do
+      command=`head -$line_i $taskfile | tail -1` 
+
+      echo "task${line_i}:" >>$makefile
+      $ECHO "\t${command}" >>$makefile
+      echo "" >>$makefile
+      line_i=`expr $line_i + 1`
+   done
+
+   unset max_lines
+   unset taskfile
+   unset makefile
+   unset line_i
+}
+
+# create the makefile
+ssession_makefile_create()
+{
+   makefile=$1
+
+   if [ -f $makefile ]; then
+      rm -f $makefile 
+      echo rm
+   fi
+   touch $makefile
+
+   unset makefile
+}
+
+# destroy the taskfile
+ssession_makefile_destroy()
+{
+   makefile=$1
+
+#   rm -f $makefile
+   unset makefile
+}
+
+# start a qmake job that executes tasks in taskfile
+ssession_start_qmake()
+{
+   makefile=$1
+
+   qmake -inherit -- -f $makefile
+}
+
+ssession_log()
+{
+   if [ $ssession_logging_enabled = true ]; then
+      echo "$@" >>$ssession_logfile
+   fi
+}
+
+if [ $# = 1 ]; then
+   if [ -f "$1" ]; then
+      tfile="$1"
+   else 
+      ssession_show_usage
+      exit
+   fi
+elif [ $# = 2 ]; then
+   if [ "$1" = "-mf" ]; then
+      mfile="$2"
+      isource="mfile"      
+   else
+      ssession_show_usage
+      exit
+   fi
+else
+   tfile="taskfile.txt"
+fi
+
+if [ "$mfile" = "" ]; then
+   if [ -d "$TMPDIR" ]; then
+      mfile="${TMPDIR}/Makefile.$$"
+   else
+      mfile="/tmp/Makefile.$$"
+   fi
+fi
+
+if [ "$isource" = "tfile" ]; then
+   ssession_log "Using taskfile \"$tfile\""
+   ssession_log "Creating makefile \"$mfile\""
+   
+   ssession_makefile_create $mfile 
+   ssession_makefile_add_all $tfile $mfile 
+   ssession_makefile_add_task $tfile $mfile 
+   ssession_start_qmake $mfile
+   ssession_makefile_destroy $mfile 
+else
+   ssession_log "Using makefile \"$mfile\""
+   
+   ssession_start_qmake $mfile
+fi
+

examples/jobs/step_A_array_submitter.sh

@@ -0,0 +1,47 @@
+#!/bin/sh
+#
+#
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+# request "/bin/sh" as shell for job
+#$ -S /bin/sh
+
+QSTAT=$SGE_ROOT/bin/$ARC/qstat
+QALTER=$SGE_ROOT/bin/$ARC/qalter
+
+# find out successor jobid 
+# must be set by submission script
+successor=`$QSTAT -j $JOB_ID | grep context |cut -f2 -d=`
+
+# release appropriate succesor task
+$QALTER -h U $successor.$SGE_TASK_ID

examples/jobs/step_B_array_submitter.sh

@@ -0,0 +1,39 @@
+#!/bin/sh
+#
+#
+#___INFO__MARK_BEGIN__
+##########################################################################
+#
+#  The Contents of this file are made available subject to the terms of
+#  the Sun Industry Standards Source License Version 1.2
+#
+#  Sun Microsystems Inc., March, 2001
+#
+#
+#  Sun Industry Standards Source License Version 1.2
+#  =================================================
+#  The contents of this file are subject to the Sun Industry Standards
+#  Source License Version 1.2 (the "License"); You may not use this file
+#  except in compliance with the License. You may obtain a copy of the
+#  License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
+#
+#  Software provided under this License is provided on an "AS IS" basis,
+#  WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
+#  WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
+#  MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
+#  See the License for the specific provisions governing your rights and
+#  obligations concerning the Software.
+#
+#  The Initial Developer of the Original Code is: Sun Microsystems, Inc.
+#
+#  Copyright: 2001 by Sun Microsystems, Inc.
+#
+#  All Rights Reserved.
+#
+##########################################################################
+#___INFO__MARK_END__
+
+# request "/bin/sh" as shell for job
+#$ -S /bin/sh
+
+echo $JOB_ID.$SGE_TASK_ID