examples/jobs/periodic_sleeper.sh

@@ -1,75 +0,0 @@
-#!/bin/bash
-# This job script takes a nap for 10 seconds (or paramter $2) every 30 minutes (or paramter $1)
-
-# SGE options
-#$ -N PSleeper
-#$ -l scf=1M,mem=100M,h_vmem=100M
-#$ -q normal.q
-#$ -cwd
-
-# process args
-case "$1" in
-    -h)
-        echo "usage: $0 [-h | [-d] [T] [nap]]"
-        echo "periodically take a nap"
-        echo ""
-        echo "-h   print this help and exit"
-        echo "-d   print debug info"
-        echo "T    take a nap every T minutes (default: 30)"
-        echo "nap  take a nap for nap seconds (default: 10)"
-        exit 1
-        ;;
-    *)
-        debug=0
-        terse="-terse"
-        debug_flag=""
-        do_echo=0
-        T=30
-        nap=10
-        while (( "$#" )); do
-            case "$1" in
-                -d)
-                    debug=1
-                    terse=""
-                    debug_flag="-d"
-                    do_echo=1
-                    ;;
-                *)
-                    T=${1:-30}
-                    nap=${2:-10}
-                    break
-                    ;;
-            esac
-            shift
-        done
-        ;;
-esac
-
-# set other variables
-next=$(date -d "${T} minutes" +%Y%m%d%H%M)
-script=/opt/SGE/examples/jobs/periodic_sleeper.sh
-
-# output some informations
-if [ ${debug} -eq 1 ]; then
-    echo "T = ${T}, nap=${nap}"
-    echo "next run at ${next} (YYYYMMDDhhmm)"
-    echo "debug_flag = ${debug_flag}, do_echo = ${do_echo}"
-    echo ""
-fi
-
-# commands to run in Grid Engine
-/opt/SGE/examples/jobs/sleeper.sh ${nap} ${do_echo}
-
-# re-submit script to execute in T minutes
-jobid=$(qsub ${terse} -a ${next} ${script} ${debug_flag} ${T} ${nap})
-exit_code=$?
-if [ ${debug} -eq 1 ]; then
-    echo "${jobid}"
-fi
-if [ ${exit_code} -ne 0 ]; then
-    if [ ${debug} -eq 1 ]; then
-        echo "${jobid}"
-        echo "Ups, something went wrong, check output!"
-    fi
-    exit ${exit_code}
-fi

prolog.d/10-GPU_allocate.sh

@@ -35,7 +35,7 @@ function clean_up() {
 
 ### get requested number of GPU's
 # use hard resource list first
-NGPUS=$(qstat -j ${JOB_ID} 2>/dev/null | sed -n "s/hard resource_list:.*gpu=\([[:digit:]]\+\).*/\1/p")
+NGPUS=$(qstat -j ${JOB_ID} | sed -n "s/hard resource_list:.*gpu=\([[:digit:]]\+\).*/\1/p")
 # set NGPUS to zero if empty
 if [ -z "${NGPUS}" ] ; then
     NGPUS=0