107 lines
3.2 KiB
Bash
Executable File
107 lines
3.2 KiB
Bash
Executable File
#!/bin/sh
|
|
#
|
|
#___INFO__MARK_BEGIN__
|
|
##########################################################################
|
|
#
|
|
# The Contents of this file are made available subject to the terms of
|
|
# the Sun Industry Standards Source License Version 1.2
|
|
#
|
|
# Sun Microsystems Inc., March, 2001
|
|
#
|
|
#
|
|
# Sun Industry Standards Source License Version 1.2
|
|
# =================================================
|
|
# The contents of this file are subject to the Sun Industry Standards
|
|
# Source License Version 1.2 (the "License"); You may not use this file
|
|
# except in compliance with the License. You may obtain a copy of the
|
|
# License at http://gridengine.sunsource.net/Gridengine_SISSL_license.html
|
|
#
|
|
# Software provided under this License is provided on an "AS IS" basis,
|
|
# WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
|
|
# WITHOUT LIMITATION, WARRANTIES THAT THE SOFTWARE IS FREE OF DEFECTS,
|
|
# MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE, OR NON-INFRINGING.
|
|
# See the License for the specific provisions governing your rights and
|
|
# obligations concerning the Software.
|
|
#
|
|
# The Initial Developer of the Original Code is: Sun Microsystems, Inc.
|
|
#
|
|
# Copyright: 2001 by Sun Microsystems, Inc.
|
|
#
|
|
# All Rights Reserved.
|
|
#
|
|
##########################################################################
|
|
#___INFO__MARK_END__
|
|
|
|
#
|
|
# This sample consists of three scripts belonging toghether
|
|
#
|
|
# array_submitter.sh
|
|
# step_A_array_submitter.sh
|
|
# step_B_array_submitter.sh
|
|
#
|
|
# The number <n> passed as an argument to the interactively started
|
|
# array_submitter.sh is used to specify the the size of the two array
|
|
# jobs step_A_array_submitter.sh/step_B_array_submitter.sh which are
|
|
# submitted. Each single job of array job B is not scheduled before
|
|
# array job A has not passed the section where qalter is used to release
|
|
# the succesor task. Refer to qsub(1) for more information about array
|
|
# jobs.
|
|
#
|
|
# This is a typical scenario in DCC industry where schemes like this
|
|
# are used to control sequence of large rendering jobs.
|
|
# Note that it is necessary that all hosts where A jobs are started
|
|
# must be submit hosts to allow the qalter happen.
|
|
#
|
|
|
|
#$ -S /bin/sh
|
|
|
|
if [ x$SGE_ROOT = x ]; then
|
|
SGE_ROOT=/usr/SGE
|
|
fi
|
|
if [ ! -d $SGE_ROOT ]; then
|
|
echo "error: SGE_ROOT directory $SGE_ROOT does not exist"
|
|
exit 1
|
|
fi
|
|
|
|
ARC=`$SGE_ROOT/util/arch`
|
|
|
|
QSUB=$SGE_ROOT/bin/$ARC/qsub
|
|
QALTER=$SGE_ROOT/bin/$ARC/qalter
|
|
|
|
if [ ! -x $QSUB ]; then
|
|
echo "error: cannot execute qsub command under $QSUB"
|
|
exit 1
|
|
fi
|
|
|
|
if [ ! -x $QALTER ]; then
|
|
echo "error: cannot execute qalter command under $QALTER"
|
|
exit 1
|
|
fi
|
|
|
|
tasks=0
|
|
|
|
while [ "$1" != "" ]; do
|
|
case "$1" in
|
|
[0-9]*)
|
|
tasks=$1
|
|
shift
|
|
;;
|
|
esac
|
|
done
|
|
|
|
if [ $tasks = 0 ]; then
|
|
echo "usage: array_submitter.sh <number_of_tasks>"
|
|
exit 1
|
|
fi
|
|
|
|
# submit step A jobarray
|
|
jobid_a=`$QSUB -t 1-$tasks -r y -N StepA $SGE_ROOT/examples/jobs/step_A_array_submitter.sh | cut -f3 -d" "|cut -f1 -d.`
|
|
echo "submission result: jobid_a = $jobid_a"
|
|
|
|
# submit step B jobarray with hold state
|
|
jobid_b=`$QSUB -t 1-$tasks -h -r y -N StepB $SGE_ROOT/examples/jobs/step_B_array_submitter.sh | cut -f3 -d" "|cut -f1 -d.`
|
|
echo "submission result: jobid_b = $jobid_b"
|
|
|
|
# put jobid of step B into context of step A
|
|
$QALTER -ac succ=$jobid_b $jobid_a
|