Kasper D. Fischer
fd6c9867f2
This scripts are for testing and to show how to write your own gridengine scripts
82 lines
2.4 KiB
Bash
Executable File
82 lines
2.4 KiB
Bash
Executable File
#!/bin/bash
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#############################################################
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# This example produces a very simple plot and #
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# saves it as Matlab figure file and as PNG file #
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#############################################################
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#############################################################
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# set qsub options #
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#############################################################
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# run in low.q
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#$ -l low
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# request enough memory
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#$ -l h_vmem=8G,memory=8G,h_stack=8M
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# request 1 matlab license.
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#$ -l matlab=1
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# Name the job 'Matlab'
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#$ -N Matlab
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# send e-mail after job has finished
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# use the -M option to define your e-mail address
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# #$ -M meine-email@example.org
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#$ -m e
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# join stdout and stderr in one file
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#$ -j y
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#############################################################
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# output hostname and date (comment out if not needed) #
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#############################################################
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echo "Runnning Matlab on host " `hostname`
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echo "Starting Matlab at " `date`
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#############################################################
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# launch matlab #
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#############################################################
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# run non-interactive Matlab session
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# use no display (-nodisplay)
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# don't show splash screen at startup (-nosplash)
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# don't start the matlab desktop (-nodesktop)
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# use software opengl (-softwareopengl)
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# only use single threaded computations (limit to use of 1 core, -singleCompThread)
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# execute all matlab commands between '<< END' and matching 'END'
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# Don't forget to add 'exit' and 'END' after replacing
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# the commands with your own!
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/opt/matlab/bin/matlab -nodisplay -nosplash -nodesktop -softwareopengl -singleCompThread << END
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% get environment variable JOB_ID
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jobid=str2num(getenv('JOB_ID'));
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if isempty(jobid)
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jobid = 0;
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end
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% create filenames for the figure
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filename=sprintf('matlab_figure_%d', jobid);
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% create new empty figure and save figure handle
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fh = figure();
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% draw plot
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plot(-pi:0.01:pi, sin(-pi:0.01:pi));
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% save figure as matlab figure and PNG
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saveas(fh, filename, 'fig');
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saveas(fh, filename, 'png');
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% EXIT MATLAB
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exit;
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END
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#############################################################
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# output date (comment out if not needed) #
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#############################################################
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echo "Matlab finnished at " `date`
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