[update] major improvements of array_map, code restyled, increased flexibility
This commit is contained in:
parent
f50e38241e
commit
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9
PyLoT.py
9
PyLoT.py
@ -86,7 +86,7 @@ from pylot.core.util.widgets import FilterOptionsDialog, NewEventDlg, \
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PylotCanvas, WaveformWidgetPG, PropertiesDlg, HelpForm, createAction, PickDlg, \
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getDataType, ComparisonWidget, TuneAutopicker, PylotParaBox, AutoPickDlg, CanvasWidget, AutoPickWidget, \
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CompareEventsWidget
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from pylot.core.util.map_projection import map_projection
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from pylot.core.util.array_map import Array_map
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from pylot.core.util.structure import DATASTRUCTURE
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from pylot.core.util.thread import Thread, Worker
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from pylot.core.util.version import get_git_version as _getVersionString
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@ -2850,9 +2850,9 @@ class MainWindow(QMainWindow):
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if not self.metadata:
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return
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self.am_figure = Figure()
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self.am_canvas = FigureCanvas(self.am_figure)
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self.am_canvas = PylotCanvas(self.am_figure, parent=self, panZoomX=False, panZoomY=False)
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self.am_toolbar = NavigationToolbar(self.am_canvas, self)
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self.array_map = map_projection(self)
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self.array_map = Array_map(self)
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# self.array_map_thread()
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self.array_layout.addWidget(self.array_map)
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self.tabs.setCurrentIndex(index)
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@ -2891,7 +2891,8 @@ class MainWindow(QMainWindow):
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lon = event.origins[0].longitude
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self.array_map.eventLoc = (lat, lon)
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if self.get_current_event():
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self.array_map.refresh_drawings(self.get_current_event().getPicks())
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self.array_map.refresh_drawings(self.get_current_event().getPicks(),
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self.get_current_event().getAutopicks(),)
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self._eventChanged[1] = False
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def init_event_table(self, tabindex=2):
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@ -13,19 +13,20 @@ from scipy.interpolate import griddata
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plt.interactive(False)
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class map_projection(QtGui.QWidget):
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class Array_map(QtGui.QWidget):
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def __init__(self, parent, figure=None):
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'''
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:param: picked, can be False, auto, manual
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:value: str
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Create a map of the array.
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:param parent: PyLoT Mainwindow class
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:param figure:
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'''
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QtGui.QWidget.__init__(self)
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self._parent = parent
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self.metadata = parent.metadata
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self.parser = parent.metadata[1]
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self.metadata_type = parent.metadata[0]
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self.metadata = parent.metadata[1]
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self.picks = None
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self.picks_dict = None
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self.autopicks_dict = None
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self.eventLoc = None
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self.figure = figure
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self.init_graphics()
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@ -49,9 +50,9 @@ class map_projection(QtGui.QWidget):
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return
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data = self._parent.get_data().getWFData()
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for index in ind:
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station = str(self.station_names[index].split('.')[-1])
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station = str(self._station_onpick_ids[index].split('.')[-1])
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try:
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pickDlg = PickDlg(self, parameter=self._parent._inputs,
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pickDlg = PickDlg(self._parent, parameter=self._parent._inputs,
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data=data.select(station=station),
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station=station,
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picks=self._parent.get_current_event().getPick(station),
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@ -84,7 +85,29 @@ class map_projection(QtGui.QWidget):
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def connectSignals(self):
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self.comboBox_phase.currentIndexChanged.connect(self._refresh_drawings)
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self.zoom_id = self.basemap.ax.figure.canvas.mpl_connect('scroll_event', self.zoom)
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self.comboBox_am.currentIndexChanged.connect(self._refresh_drawings)
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#self.zoom_id = self.basemap.ax.figure.canvas.mpl_connect('scroll_event', self.zoom)
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def _from_dict(self, function, key):
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return function(self.stations_dict.values(), key=lambda x: x[key])[key]
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def get_min_from_stations(self, key):
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return self._from_dict(min, key)
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def get_max_from_stations(self, key):
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return self._from_dict(max, key)
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def get_min_from_picks(self):
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return min(self.picks_rel.values())
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def get_max_from_picks(self):
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return max(self.picks_rel.values())
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def current_picks_dict(self):
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picktype = self.comboBox_am.currentText()
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auto_manu = {'auto': self.autopicks_dict,
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'manual': self.picks_dict}
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return auto_manu[picktype]
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def init_graphics(self):
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if not self.figure:
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@ -115,103 +138,97 @@ class map_projection(QtGui.QWidget):
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self.top_row.addWidget(QtGui.QLabel('Select a phase: '))
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self.top_row.addWidget(self.comboBox_phase)
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self.top_row.setStretch(1, 1) # set stretch of item 1 to 1
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self.top_row.addWidget(QtGui.QLabel('Pick type: '))
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self.top_row.addWidget(self.comboBox_am)
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self.top_row.setStretch(3, 1) # set stretch of item 1 to 1
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self.main_box.addWidget(self.canvas)
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self.main_box.addWidget(self.toolbar)
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def init_stations(self):
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def get_station_names_lat_lon(parser):
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station_names = []
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lat = []
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lon = []
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def stat_info_from_parser(parser):
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stations_dict = {}
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for station in parser.stations:
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station_name = station[0].station_call_letters
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network = station[0].network_code
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if not station_name in station_names:
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station_names.append(network + '.' + station_name)
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lat.append(station[0].latitude)
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lon.append(station[0].longitude)
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return station_names, lat, lon
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network_name = station[0].network_code
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if not station_name in stations_dict.keys():
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st_id = network_name + '.' + station_name
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stations_dict[st_id] = {'latitude': station[0].latitude,
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'longitude': station[0].longitude}
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return stations_dict
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station_names, lat, lon = get_station_names_lat_lon(self.parser)
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self.station_names = station_names
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self.lat = lat
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self.lon = lon
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def stat_info_from_inventory(inventory):
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stations_dict = {}
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for network in inventory.networks:
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for station in network.stations:
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station_name = station.code
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network_name = network_name.code
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if not station_name in stations_dict.keys():
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st_id = network_name + '.' + station_name
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stations_dict[st_id] = {'latitude': station[0].latitude,
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'longitude': station[0].longitude}
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return stations_dict
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read_stat = {'xml': stat_info_from_inventory,
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'dless': stat_info_from_parser}
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self.stations_dict = read_stat[self.metadata_type](self.metadata)
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self.latmin = self.get_min_from_stations('latitude')
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self.lonmin = self.get_min_from_stations('longitude')
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self.latmax = self.get_max_from_stations('latitude')
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self.lonmax = self.get_max_from_stations('longitude')
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def init_picks(self):
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def get_picks(station_dict):
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picks = {}
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phase = self.comboBox_phase.currentText()
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def get_picks(station_names):
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picks = []
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for station in station_names:
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for st_id in station_dict.keys():
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try:
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station = station.split('.')[-1]
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picks.append(self.picks_dict[station][phase]['mpp'])
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except:
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picks.append(np.nan)
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station_name = st_id.split('.')[-1]
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picks[st_id] = self.current_picks_dict()[station_name][phase]['mpp']
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except KeyError:
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continue
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except Exception as e:
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print('Cannot display pick for station {}. Reason: {}'.format(station_name, e))
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return picks
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def get_picks_rel(picks):
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picks_rel = []
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picks_rel = {}
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picks_utc = []
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for pick in picks:
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for pick in picks.values():
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if type(pick) is obspy.core.utcdatetime.UTCDateTime:
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picks_utc.append(pick)
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minp = min(picks_utc)
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for pick in picks:
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for st_id, pick in picks.items():
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if type(pick) is obspy.core.utcdatetime.UTCDateTime:
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pick -= minp
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picks_rel.append(pick)
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picks_rel[st_id] = pick
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return picks_rel
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self.picks = get_picks(self.station_names)
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self.picks = get_picks(self.stations_dict)
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self.picks_rel = get_picks_rel(self.picks)
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def init_picks_active(self):
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def remove_nan_picks(picks):
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picks_no_nan = []
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for pick in picks:
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if not np.isnan(pick):
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picks_no_nan.append(pick)
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return picks_no_nan
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self.picks_no_nan = remove_nan_picks(self.picks_rel)
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def init_stations_active(self):
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def remove_nan_lat_lon(picks, lat, lon):
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lat_no_nan = []
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lon_no_nan = []
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for index, pick in enumerate(picks):
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if not np.isnan(pick):
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lat_no_nan.append(lat[index])
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lon_no_nan.append(lon[index])
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return lat_no_nan, lon_no_nan
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self.lat_no_nan, self.lon_no_nan = remove_nan_lat_lon(self.picks_rel, self.lat, self.lon)
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def init_lat_lon_dimensions(self):
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def get_lon_lat_dim(lon, lat):
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londim = max(lon) - min(lon)
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latdim = max(lat) - min(lat)
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return londim, latdim
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self.londim, self.latdim = get_lon_lat_dim(self.lon, self.lat)
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# init minimum and maximum lon and lat dimensions
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self.londim = self.lonmax - self.lonmin
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self.latdim = self.latmax - self.latmin
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def init_x_y_dimensions(self):
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def get_x_y_dim(x, y):
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xdim = max(x) - min(x)
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ydim = max(y) - min(y)
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return xdim, ydim
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# transformation of lat/lon to ax coordinate system
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for st_id, coords in self.stations_dict.items():
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lat, lon = coords['latitude'], coords['longitude']
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coords['x'], coords['y'] = self.basemap(lon, lat)
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self.x, self.y = self.basemap(self.lon, self.lat)
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self.xdim, self.ydim = get_x_y_dim(self.x, self.y)
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self.xdim = self.get_max_from_stations('x') - self.get_min_from_stations('x')
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self.ydim = self.get_max_from_stations('y') - self.get_min_from_stations('y')
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def init_basemap(self, resolution='l'):
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# basemap = Basemap(projection=projection, resolution = resolution, ax=self.main_ax)
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basemap = Basemap(projection='lcc', resolution=resolution, ax=self.main_ax,
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width=5e6, height=2e6,
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lat_0=(min(self.lat) + max(self.lat)) / 2.,
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lon_0=(min(self.lon) + max(self.lon)) / 2.)
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lat_0=(self.latmin + self.latmax) / 2.,
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lon_0=(self.lonmin + self.lonmax) / 2.)
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# basemap.fillcontinents(color=None, lake_color='aqua',zorder=1)
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basemap.drawmapboundary(zorder=2) # fill_color='darkblue')
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@ -222,60 +239,81 @@ class map_projection(QtGui.QWidget):
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self.basemap = basemap
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self.figure.tight_layout()
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def init_lat_lon_grid(self):
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def get_lat_lon_axis(lat, lon):
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steplat = (max(lat) - min(lat)) / 250
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steplon = (max(lon) - min(lon)) / 250
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lataxis = np.arange(min(lat), max(lat), steplat)
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lonaxis = np.arange(min(lon), max(lon), steplon)
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return lataxis, lonaxis
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def get_lat_lon_grid(lataxis, lonaxis):
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longrid, latgrid = np.meshgrid(lonaxis, lataxis)
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return latgrid, longrid
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self.lataxis, self.lonaxis = get_lat_lon_axis(self.lat, self.lon)
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self.latgrid, self.longrid = get_lat_lon_grid(self.lataxis, self.lonaxis)
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def init_lat_lon_grid(self, nstep=250):
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# create a regular grid to display colormap
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lataxis = np.linspace(self.latmin, self.latmax, nstep)
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lonaxis = np.linspace(self.lonmin, self.lonmax, nstep)
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self.longrid, self.latgrid = np.meshgrid(lonaxis, lataxis)
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def init_picksgrid(self):
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self.picksgrid_no_nan = griddata((self.lat_no_nan, self.lon_no_nan),
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self.picks_no_nan, (self.latgrid, self.longrid),
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method='linear') ##################
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picks, lats, lons = self.get_picks_lat_lon()
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self.picksgrid_active = griddata((lats, lons), picks, (self.latgrid, self.longrid),
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method='linear')
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def get_st_lat_lon_for_plot(self):
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stations = []
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latitudes = []
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longitudes = []
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for st_id, coords in self.stations_dict.items():
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stations.append(st_id)
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latitudes.append(coords['latitude'])
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longitudes.append(coords['longitude'])
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return stations, latitudes, longitudes
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def get_st_x_y_for_plot(self):
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stations = []
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xs = []
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ys = []
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for st_id, coords in self.stations_dict.items():
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stations.append(st_id)
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xs.append(coords['x'])
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ys.append(coords['y'])
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return stations, xs, ys
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def get_picks_lat_lon(self):
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picks = []
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latitudes = []
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longitudes = []
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for st_id, pick in self.picks_rel.items():
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picks.append(pick)
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latitudes.append(self.stations_dict[st_id]['latitude'])
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longitudes.append(self.stations_dict[st_id]['longitude'])
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return picks, latitudes, longitudes
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def draw_contour_filled(self, nlevel='50'):
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levels = np.linspace(min(self.picks_no_nan), max(self.picks_no_nan), nlevel)
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self.contourf = self.basemap.contourf(self.longrid, self.latgrid, self.picksgrid_no_nan,
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levels = np.linspace(self.get_min_from_picks(), self.get_max_from_picks(), nlevel)
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self.contourf = self.basemap.contourf(self.longrid, self.latgrid, self.picksgrid_active,
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levels, latlon=True, zorder=9, alpha=0.5)
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def scatter_all_stations(self):
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self.sc = self.basemap.scatter(self.lon, self.lat, s=50, facecolor='none', latlon=True,
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stations, lats, lons = self.get_st_lat_lon_for_plot()
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self.sc = self.basemap.scatter(lons, lats, s=50, facecolor='none', latlon=True,
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zorder=10, picker=True, edgecolor='m', label='Not Picked')
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self.cid = self.canvas.mpl_connect('pick_event', self.onpick)
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self._station_onpick_ids = stations
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if self.eventLoc:
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lat, lon = self.eventLoc
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self.sc_event = self.basemap.scatter(lon, lat, s=100, facecolor='red',
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lats, lons = self.eventLoc
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self.sc_event = self.basemap.scatter(lons, lats, s=100, facecolor='red',
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latlon=True, zorder=11, label='Event (might be outside map region)')
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def scatter_picked_stations(self):
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lon = self.lon_no_nan
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lat = self.lat_no_nan
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picks, lats, lons = self.get_picks_lat_lon()
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# workaround because of an issue with latlon transformation of arrays with len <3
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if len(lon) <= 2 and len(lat) <= 2:
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self.sc_picked = self.basemap.scatter(lon[0], lat[0], s=50, facecolor='white',
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c=self.picks_no_nan[0], latlon=True, zorder=11, label='Picked')
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if len(lon) == 2 and len(lat) == 2:
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self.sc_picked = self.basemap.scatter(lon[1], lat[1], s=50, facecolor='white',
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c=self.picks_no_nan[1], latlon=True, zorder=11)
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if len(lons) <= 2 and len(lats) <= 2:
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self.sc_picked = self.basemap.scatter(lons[0], lats[0], s=50, facecolor='white',
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c=picks[0], latlon=True, zorder=11, label='Picked')
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if len(lons) == 2 and len(lats) == 2:
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self.sc_picked = self.basemap.scatter(lons[1], lats[1], s=50, facecolor='white',
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c=picks[1], latlon=True, zorder=11)
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else:
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self.sc_picked = self.basemap.scatter(lon, lat, s=50, facecolor='white',
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c=self.picks_no_nan, latlon=True, zorder=11, label='Picked')
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self.sc_picked = self.basemap.scatter(lons, lats, s=50, facecolor='white',
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c=picks, latlon=True, zorder=11, label='Picked')
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def annotate_ax(self):
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self.annotations = []
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for index, name in enumerate(self.station_names):
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self.annotations.append(self.main_ax.annotate(' %s' % name, xy=(self.x[index], self.y[index]),
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stations, xs, ys = self.get_st_x_y_for_plot()
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for st, x, y in zip(stations, xs, ys):
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self.annotations.append(self.main_ax.annotate(' %s' % st, xy=(x, y),
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fontsize='x-small', color='white', zorder=12))
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self.legend = self.main_ax.legend(loc=1)
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@ -284,8 +322,9 @@ class map_projection(QtGui.QWidget):
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cbar.set_label(label)
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return cbar
|
||||
|
||||
def refresh_drawings(self, picks=None):
|
||||
def refresh_drawings(self, picks=None, autopicks=None):
|
||||
self.picks_dict = picks
|
||||
self.autopicks_dict = autopicks
|
||||
self._refresh_drawings()
|
||||
|
||||
def _refresh_drawings(self):
|
||||
@ -295,9 +334,7 @@ class map_projection(QtGui.QWidget):
|
||||
def draw_everything(self):
|
||||
if self.picks_dict:
|
||||
self.init_picks()
|
||||
self.init_picks_active()
|
||||
self.init_stations_active()
|
||||
if len(self.picks_no_nan) >= 3:
|
||||
if len(self.picks) >= 3:
|
||||
self.init_picksgrid()
|
||||
self.draw_contour_filled()
|
||||
self.scatter_all_stations()
|
||||
@ -311,15 +348,15 @@ class map_projection(QtGui.QWidget):
|
||||
self.canvas.draw()
|
||||
|
||||
def remove_drawings(self):
|
||||
if hasattr(self, 'cbar'):
|
||||
self.cbar.remove()
|
||||
del (self.cbar)
|
||||
if hasattr(self, 'sc_picked'):
|
||||
self.sc_picked.remove()
|
||||
del (self.sc_picked)
|
||||
if hasattr(self, 'sc_event'):
|
||||
self.sc_event.remove()
|
||||
del (self.sc_event)
|
||||
if hasattr(self, 'cbar'):
|
||||
self.cbar.remove()
|
||||
del (self.cbar)
|
||||
if hasattr(self, 'contourf'):
|
||||
self.remove_contourf()
|
||||
del (self.contourf)
|
||||
Loading…
Reference in New Issue
Block a user