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debugged some code fragments while trying to solve the load event data problem

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Sebastian Wehling-Benatelli 2015-09-17 17:55:40 +02:00
commit 2b42583999
8 changed files with 58 additions and 31 deletions
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37
QtPyLoT.py
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@ -36,7 +36,7 @@ from PySide.QtGui import QMainWindow, QInputDialog, QIcon, QFileDialog, \
QDialog, QErrorMessage, QApplication, QPixmap, QMessageBox, QSplashScreen, \ QDialog, QErrorMessage, QApplication, QPixmap, QMessageBox, QSplashScreen, \
QActionGroup, QListWidget, QDockWidget QActionGroup, QListWidget, QDockWidget
import numpy as np import numpy as np
from obspy.core import UTCDateTime from obspy import UTCDateTime, readEvents
from pylot.core.read.data import Data from pylot.core.read.data import Data
from pylot.core.read.inputs import FilterOptions, AutoPickParameter from pylot.core.read.inputs import FilterOptions, AutoPickParameter
@ -339,6 +339,8 @@ class MainWindow(QMainWindow):
return settings.value("data/dataRoot") return settings.value("data/dataRoot")
def loadData(self, fname=None): def loadData(self, fname=None):
if not self.okToContinue():
return
if fname is None: if fname is None:
action = self.sender() action = self.sender()
if isinstance(action, QAction): if isinstance(action, QAction):
@ -348,16 +350,13 @@ class MainWindow(QMainWindow):
fname = QFileDialog().getOpenFileName(self, fname = QFileDialog().getOpenFileName(self,
caption=caption, caption=caption,
filter=filt) filter=filt)
self.setFileName(fname[0]) fname = fname[0]
else:
self.setFileName(unicode(action.data().toString()))
if not self.okToContinue():
return
else: else:
fname = unicode(action.data().toString())
self.setFileName(fname) self.setFileName(fname)
self.data += Data(self, evtdata=self.getFileName()) self.data += Data(self, evtdata=self.getFileName())
self.updatePicks() self.convertPicks4PyLoT()
self.updateStatus('Event data loaded ...') self.drawPicks()
def getLastEvent(self): def getLastEvent(self):
return self.recentEvents[0] return self.recentEvents[0]
@ -468,9 +467,6 @@ class MainWindow(QMainWindow):
def getPicks(self): def getPicks(self):
return self.picks return self.picks
def updatePicks(self):
pass
def getPicksOnStation(self, station): def getPicksOnStation(self, station):
try: try:
return self.getPicks()[station] return self.getPicks()[station]
@ -696,6 +692,25 @@ class MainWindow(QMainWindow):
raise Exception('FATAL: Should never occur!') raise Exception('FATAL: Should never occur!')
self.getPicks()[station] = stat_picks self.getPicks()[station] = stat_picks
def convertPicks4PyLoT(self):
evt = self.getData().getEvtData()
picks = {}
onsets = {}
for pick in evt.picks:
phase = {}
station = pick.waveform_id.station_code
mpp = pick.time
lpp = mpp + pick.time.upper_uncertainty
epp = mpp - pick.time.lower_uncertainty
spe = pick.time.uncertainty
phase['mpp'] = mpp
phase['epp'] = epp
phase['lpp'] = lpp
phase['spe'] = spe
onsets[pick.phase_hint] = phase
picks[station] = onsets
def drawPicks(self, station=None): def drawPicks(self, station=None):
# if picks to draw not specified, draw all picks available # if picks to draw not specified, draw all picks available
if not station: if not station:

4
autoPyLoT_local.in
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@ -7,8 +7,8 @@
#main settings# #main settings#
/DATA/Insheim #rootpath# %project path /DATA/Insheim #rootpath# %project path
EVENT_DATA/LOCAL #datapath# %data path EVENT_DATA/LOCAL #datapath# %data path
2015.08_Insheim #database# %name of data base 2013.02_Insheim #database# %name of data base
e0013.241.15 #eventID# %event ID for single event processing e0019.048.13 #eventID# %event ID for single event processing
/DATA/Insheim/STAT_INFO #invdir# %full path to inventory or dataless-seed file /DATA/Insheim/STAT_INFO #invdir# %full path to inventory or dataless-seed file
PILOT #datastructure# %choose data structure PILOT #datastructure# %choose data structure
0 #iplot# %flag for plotting: 0 none, 1, partly, >1 everything 0 #iplot# %flag for plotting: 0 none, 1, partly, >1 everything

18
autoPyLoT_regional.in
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@ -32,7 +32,7 @@ HYPOSAT #locrt# %location routine used ("HYPO
#common settings picker# #common settings picker#
20 #pstart# %start time [s] for calculating CF for P-picking 20 #pstart# %start time [s] for calculating CF for P-picking
100 #pstop# %end time [s] for calculating CF for P-picking 100 #pstop# %end time [s] for calculating CF for P-picking
3.0 #sstart# %start time [s] after or before(-) P-onset for calculating CF for S-picking 1.0 #sstart# %start time [s] after or before(-) P-onset for calculating CF for S-picking
100 #sstop# %end time [s] after P-onset for calculating CF for S-picking 100 #sstop# %end time [s] after P-onset for calculating CF for S-picking
3 10 #bpz1# %lower/upper corner freq. of first band pass filter Z-comp. [Hz] 3 10 #bpz1# %lower/upper corner freq. of first band pass filter Z-comp. [Hz]
3 12 #bpz2# %lower/upper corner freq. of second band pass filter Z-comp. [Hz] 3 12 #bpz2# %lower/upper corner freq. of second band pass filter Z-comp. [Hz]
@ -65,11 +65,11 @@ ARH #algoS# %choose algorithm for S-onset
0.3 #tpred2h# %for HOS/AR, length of AR-prediction window [s], H-components, 2nd pick 0.3 #tpred2h# %for HOS/AR, length of AR-prediction window [s], H-components, 2nd pick
4 #Sarorder# %for AR-picker, order of AR process of H-components 4 #Sarorder# %for AR-picker, order of AR process of H-components
10 #Srecalcwin# %for AR-picker, window length [s] for recalculation of CF (2nd pick) (H) 10 #Srecalcwin# %for AR-picker, window length [s] for recalculation of CF (2nd pick) (H)
6 #pickwinS# %for initial AIC and refined pick, length of S-pick window [s] 25 #pickwinS# %for initial AIC and refined pick, length of S-pick window [s]
5 0.2 3.0 3.0 #tsnrh# %for ARH/AR3, window lengths for SNR-and slope estimation [tnoise,tsafetey,tsignal,tslope] [s] 5 0.2 3.0 3.0 #tsnrh# %for ARH/AR3, window lengths for SNR-and slope estimation [tnoise,tsafetey,tsignal,tslope] [s]
3.0 #aictsmoothS# %for AIC-picker, take average of samples for smoothing of AIC-function [s] 3.5 #aictsmoothS# %for AIC-picker, take average of samples for smoothing of AIC-function [s]
1.0 #tsmoothS# %for AR-picker, take average of samples for smoothing CF [s] (S) 1.0 #tsmoothS# %for AR-picker, take average of samples for smoothing CF [s] (S)
0.4 #ausS# %for HOS/AR, artificial uplift of samples (aus) of CF (S) 0.2 #ausS# %for HOS/AR, artificial uplift of samples (aus) of CF (S)
1.5 #nfacS# %for AR-picker, noise factor for noise level determination (S) 1.5 #nfacS# %for AR-picker, noise factor for noise level determination (S)
%first-motion picker% %first-motion picker%
1 #minfmweight# %minimum required p weight for first-motion determination 1 #minfmweight# %minimum required p weight for first-motion determination
@ -81,16 +81,16 @@ ARH #algoS# %choose algorithm for S-onset
0.04 0.08 0.16 0.32 #timeerrorsS# %discrete time errors [s] corresponding to picking weights [0 1 2 3] for S 0.04 0.08 0.16 0.32 #timeerrorsS# %discrete time errors [s] corresponding to picking weights [0 1 2 3] for S
3 #minAICPslope# %below this slope [counts/s] the initial P pick is rejected 3 #minAICPslope# %below this slope [counts/s] the initial P pick is rejected
1.2 #minAICPSNR# %below this SNR the initial P pick is rejected 1.2 #minAICPSNR# %below this SNR the initial P pick is rejected
3 #minAICSslope# %below this slope [counts/s] the initial S pick is rejected 5 #minAICSslope# %below this slope [counts/s] the initial S pick is rejected
1.5 #minAICSSNR# %below this SNR the initial S pick is rejected 2.5 #minAICSSNR# %below this SNR the initial S pick is rejected
#check duration of signal using envelope function# #check duration of signal using envelope function#
30 #minsiglength# %minimum required length of signal [s] 30 #minsiglength# %minimum required length of signal [s]
2.5 #noisefactor# %noiselevel*noisefactor=threshold 2.5 #noisefactor# %noiselevel*noisefactor=threshold
60 #minpercent# %required percentage of samples higher than threshold 60 #minpercent# %required percentage of samples higher than threshold
#check for spuriously picked S-onsets# #check for spuriously picked S-onsets#
1.5 #zfac# %P-amplitude must exceed at least zfac times RMS-S amplitude 1.0 #zfac# %P-amplitude must exceed at least zfac times RMS-S amplitude
#check statistics of P onsets# #check statistics of P onsets#
35 #mdttolerance# %maximum allowed deviation of P picks from median [s] 45 #mdttolerance# %maximum allowed deviation of P picks from median [s]
#wadati check# #wadati check#
2.0 #wdttolerance# %maximum allowed deviation from Wadati-diagram 3.0 #wdttolerance# %maximum allowed deviation from Wadati-diagram

4
pylot/core/pick/CharFuns.py
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@ -218,7 +218,7 @@ class AICcf(CharacteristicFunction):
def calcCF(self, data): def calcCF(self, data):
print 'Calculating AIC ...' #print 'Calculating AIC ...' ## MP MP output suppressed
x = self.getDataArray() x = self.getDataArray()
xnp = x[0].data xnp = x[0].data
nn = np.isnan(xnp) nn = np.isnan(xnp)
@ -260,7 +260,7 @@ class HOScf(CharacteristicFunction):
y = np.power(xnp, 3) y = np.power(xnp, 3)
y1 = np.power(xnp, 2) y1 = np.power(xnp, 2)
elif self.getOrder() == 4: # this is kurtosis elif self.getOrder() == 4: # this is kurtosis
print 'Calculating kurtosis ...' #print 'Calculating kurtosis ...' ## MP MP output suppressed
y = np.power(xnp, 4) y = np.power(xnp, 4)
y1 = np.power(xnp, 2) y1 = np.power(xnp, 2)

4
pylot/core/pick/Picker.py
View File

@ -18,6 +18,7 @@ calculated after Diehl & Kissling (2009).
:author: MAGS2 EP3 working group / Ludger Kueperkoch :author: MAGS2 EP3 working group / Ludger Kueperkoch
""" """
import numpy as np import numpy as np
import matplotlib.pyplot as plt import matplotlib.pyplot as plt
from pylot.core.pick.utils import getnoisewin, getsignalwin from pylot.core.pick.utils import getnoisewin, getsignalwin
@ -245,8 +246,7 @@ class AICPicker(AutoPicking):
if datafit[0] >= datafit[len(datafit) - 1]: if datafit[0] >= datafit[len(datafit) - 1]:
print 'AICPicker: Negative slope, bad onset skipped!' print 'AICPicker: Negative slope, bad onset skipped!'
return return
self.slope = 1 / tslope * (datafit[len(dataslope) - 1] - datafit[0])
self.slope = 1 / tslope * datafit[len(dataslope) - 1] - datafit[0]
else: else:
self.SNR = None self.SNR = None

6
pylot/core/pick/utils.py
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@ -43,7 +43,13 @@ def earllatepicker(X, nfac, TSNR, Pick1, iplot=None):
LPick = None LPick = None
EPick = None EPick = None
PickError = None PickError = None
<<<<<<< Updated upstream
print ("earllatepicker: Get earliest and latest possible pick relative to most likely pick ...") print ("earllatepicker: Get earliest and latest possible pick relative to most likely pick ...")
=======
# MP MP ++ output suppressed
#print 'earllatepicker: Get earliest and latest possible pick relative to most likely pick ...'
# MP MP --
>>>>>>> Stashed changes
x = X[0].data x = X[0].data
t = np.arange(0, X[0].stats.npts / X[0].stats.sampling_rate, t = np.arange(0, X[0].stats.npts / X[0].stats.sampling_rate,

8
pylot/core/read/data.py
View File

@ -386,6 +386,9 @@ class Data(object):
""" """
return self.evtdata return self.evtdata
def setEvtData(self, event):
self.evtdata = event
def applyEVTData(self, data, type='pick', authority_id='rub'): def applyEVTData(self, data, type='pick', authority_id='rub'):
""" """
@ -447,7 +450,10 @@ class Data(object):
:param event: :param event:
""" """
pass if not self.isNew():
self.setEvtData(event)
else:
raise OverwriteError('Acutal event would be overwritten!')
applydata = {'pick': applyPicks, applydata = {'pick': applyPicks,
'arrival': applyArrivals, 'arrival': applyArrivals,

2
pylot/core/util/widgets.py
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@ -105,10 +105,10 @@ class MPLWidget(FigureCanvas):
for level in noiselevel: for level in noiselevel:
self.getAxes().plot([time_ax[0], time_ax[-1]], self.getAxes().plot([time_ax[0], time_ax[-1]],
[level, level], '--k') [level, level], '--k')
self.setPlotDict(n, (station, channel))
xlabel = 'seconds since {0}'.format(wfstart) xlabel = 'seconds since {0}'.format(wfstart)
ylabel = '' ylabel = ''
self.updateWidget(xlabel, ylabel, title) self.updateWidget(xlabel, ylabel, title)
self.setPlotDict(n, (station, channel))
self.setXLims([0, wfend - wfstart]) self.setXLims([0, wfend - wfstart])
self.setYLims([-0.5, n + 0.5]) self.setYLims([-0.5, n + 0.5])
if zoomx is not None: if zoomx is not None: