marcel/pylot
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[update] improved array map, point size showing pick error class now

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Marcel Paffrath 2019-12-11 15:59:24 +01:00
parent a9135ec483
commit 3354e3980e
2 changed files with 49 additions and 19 deletions
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55
pylot/core/util/array_map.py
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@ -13,29 +13,36 @@ from mpl_toolkits.basemap import Basemap
from scipy.interpolate import griddata from scipy.interpolate import griddata
from pylot.core.util.widgets import PickDlg, PylotCanvas from pylot.core.util.widgets import PickDlg, PylotCanvas
from pylot.core.pick.utils import get_quality_class
plt.interactive(False) plt.interactive(False)
class Array_map(QtGui.QWidget): class Array_map(QtGui.QWidget):
def __init__(self, parent, metadata, figure=None, pointsize=30., linewidth=1.5, width=5e6, height=2e6): def __init__(self, parent, metadata, parameter=None, figure=None, annotate=True, pointsize=25.,
linewidth=1.5, width=5e6, height=2e6):
''' '''
Create a map of the array. Create a map of the array.
:param parent: PyLoT Mainwindow class :param parent: object of PyLoT Mainwindow class
:param parameter: object of PyLoT parameter class
:param figure: :param figure:
''' '''
QtGui.QWidget.__init__(self) QtGui.QWidget.__init__(self)
assert (parameter != None or parent != None), 'either parent or parameter has to be set'
self._parent = parent self._parent = parent
self.metadata = metadata self.metadata = metadata
self.pointsize = pointsize self.pointsize = pointsize
self.linewidth = linewidth self.linewidth = linewidth
self.width = width self.width = width
self.height = height self.height = height
self.annotate = annotate
self.picks = None self.picks = None
self.picks_dict = None self.picks_dict = None
self.uncertainties = None
self.autopicks_dict = None self.autopicks_dict = None
self.hybrids_dict = None self.hybrids_dict = None
self.eventLoc = None self.eventLoc = None
self.parameter = parameter if parameter else parent._inputs
self.figure = figure self.figure = figure
self.picks_rel = {} self.picks_rel = {}
self.marked_stations = [] self.marked_stations = []
@ -142,7 +149,7 @@ class Array_map(QtGui.QWidget):
if not data: if not data:
self._warn('No data for station {}'.format(station)) self._warn('No data for station {}'.format(station))
return return
pickDlg = PickDlg(self._parent, parameter=self._parent._inputs, pickDlg = PickDlg(self._parent, parameter=self.parameter,
data=data, network=network, station=station, data=data, network=network, station=station,
picks=self._parent.get_current_event().getPick(station), picks=self._parent.get_current_event().getPick(station),
autopicks=self._parent.get_current_event().getAutopick(station), autopicks=self._parent.get_current_event().getAutopick(station),
@ -178,6 +185,7 @@ class Array_map(QtGui.QWidget):
self.comboBox_phase.currentIndexChanged.connect(self._refresh_drawings) self.comboBox_phase.currentIndexChanged.connect(self._refresh_drawings)
self.comboBox_am.currentIndexChanged.connect(self._refresh_drawings) self.comboBox_am.currentIndexChanged.connect(self._refresh_drawings)
self.cmaps_box.currentIndexChanged.connect(self._refresh_drawings) self.cmaps_box.currentIndexChanged.connect(self._refresh_drawings)
self.annotations_box.stateChanged.connect(self.switch_annotations)
self.refresh_button.clicked.connect(self._refresh_drawings) self.refresh_button.clicked.connect(self._refresh_drawings)
self.canvas.mpl_connect('motion_notify_event', self.mouse_moved) self.canvas.mpl_connect('motion_notify_event', self.mouse_moved)
# self.zoom_id = self.basemap.ax.figure.canvas.mpl_connect('scroll_event', self.zoom) # self.zoom_id = self.basemap.ax.figure.canvas.mpl_connect('scroll_event', self.zoom)
@ -238,6 +246,8 @@ class Array_map(QtGui.QWidget):
self.comboBox_am.insertItem(1, 'manual') self.comboBox_am.insertItem(1, 'manual')
self.comboBox_am.insertItem(2, 'auto') self.comboBox_am.insertItem(2, 'auto')
self.annotations_box = QtGui.QCheckBox('Annotate')
self.annotations_box.setChecked(True)
self.auto_refresh_box = QtGui.QCheckBox('Automatic refresh') self.auto_refresh_box = QtGui.QCheckBox('Automatic refresh')
self.auto_refresh_box.setChecked(True) self.auto_refresh_box.setChecked(True)
self.refresh_button = QtGui.QPushButton('Refresh') self.refresh_button = QtGui.QPushButton('Refresh')
@ -254,6 +264,7 @@ class Array_map(QtGui.QWidget):
self.top_row.addWidget(self.comboBox_am) self.top_row.addWidget(self.comboBox_am)
self.top_row.setStretch(3, 1) # set stretch of item 1 to 1 self.top_row.setStretch(3, 1) # set stretch of item 1 to 1
self.top_row.addWidget(self.cmaps_box) self.top_row.addWidget(self.cmaps_box)
self.top_row.addWidget(self.annotations_box)
self.top_row.addWidget(self.auto_refresh_box) self.top_row.addWidget(self.auto_refresh_box)
self.top_row.addWidget(self.refresh_button) self.top_row.addWidget(self.refresh_button)
@ -271,6 +282,7 @@ class Array_map(QtGui.QWidget):
def get_picks(station_dict): def get_picks(station_dict):
self.update_hybrids_dict() self.update_hybrids_dict()
picks = {} picks = {}
uncertainties = {}
# selected phase # selected phase
phase = self.comboBox_phase.currentText() phase = self.comboBox_phase.currentText()
for st_id in station_dict.keys(): for st_id in station_dict.keys():
@ -282,11 +294,12 @@ class Array_map(QtGui.QWidget):
if not pick['spe']: if not pick['spe']:
continue continue
picks[st_id] = pick['mpp'] picks[st_id] = pick['mpp']
uncertainties[st_id] = pick['spe']
except KeyError: except KeyError:
continue continue
except Exception as e: except Exception as e:
print('Cannot display pick for station {}. Reason: {}'.format(station_name, e)) print('Cannot display pick for station {}. Reason: {}'.format(station_name, e))
return picks return picks, uncertainties
def get_picks_rel(picks): def get_picks_rel(picks):
picks_rel = {} picks_rel = {}
@ -302,7 +315,7 @@ class Array_map(QtGui.QWidget):
picks_rel[st_id] = pick picks_rel[st_id] = pick
return picks_rel return picks_rel
self.picks = get_picks(self.stations_dict) self.picks, self.uncertainties = get_picks(self.stations_dict)
self.picks_rel = get_picks_rel(self.picks) self.picks_rel = get_picks_rel(self.picks)
def init_lat_lon_dimensions(self): def init_lat_lon_dimensions(self):
@ -352,7 +365,7 @@ class Array_map(QtGui.QWidget):
self.longrid, self.latgrid = np.meshgrid(lonaxis, lataxis) self.longrid, self.latgrid = np.meshgrid(lonaxis, lataxis)
def init_picksgrid(self): def init_picksgrid(self):
picks, lats, lons = self.get_picks_lat_lon() picks, uncertainties, lats, lons = self.get_picks_lat_lon()
try: try:
self.picksgrid_active = griddata((lats, lons), picks, (self.latgrid, self.longrid), self.picksgrid_active = griddata((lats, lons), picks, (self.latgrid, self.longrid),
method='linear') method='linear')
@ -381,13 +394,15 @@ class Array_map(QtGui.QWidget):
def get_picks_lat_lon(self): def get_picks_lat_lon(self):
picks = [] picks = []
uncertainties = []
latitudes = [] latitudes = []
longitudes = [] longitudes = []
for st_id, pick in self.picks_rel.items(): for st_id, pick in self.picks_rel.items():
picks.append(pick) picks.append(pick)
uncertainties.append(self.uncertainties.get(st_id))
latitudes.append(self.stations_dict[st_id]['latitude']) latitudes.append(self.stations_dict[st_id]['latitude'])
longitudes.append(self.stations_dict[st_id]['longitude']) longitudes.append(self.stations_dict[st_id]['longitude'])
return picks, latitudes, longitudes return picks, uncertainties, latitudes, longitudes
def draw_contour_filled(self, nlevel='100'): def draw_contour_filled(self, nlevel='100'):
# self.test_gradient() # self.test_gradient()
@ -440,8 +455,8 @@ class Array_map(QtGui.QWidget):
def scatter_all_stations(self): def scatter_all_stations(self):
stations, lats, lons = self.get_st_lat_lon_for_plot() stations, lats, lons = self.get_st_lat_lon_for_plot()
self.sc = self.basemap.scatter(lons, lats, s=self.pointsize, facecolor='none', latlon=True, self.sc = self.basemap.scatter(lons, lats, s=self.pointsize, facecolor='none', latlon=True, marker='.',
zorder=10, picker=True, edgecolor='m', label='Not Picked') zorder=10, picker=True, edgecolor='0.5', label='Not Picked')
self.cid = self.canvas.mpl_connect('pick_event', self.onpick) self.cid = self.canvas.mpl_connect('pick_event', self.onpick)
self._station_onpick_ids = stations self._station_onpick_ids = stations
if self.eventLoc: if self.eventLoc:
@ -450,20 +465,25 @@ class Array_map(QtGui.QWidget):
latlon=True, zorder=11, label='Event (might be outside map region)') latlon=True, zorder=11, label='Event (might be outside map region)')
def scatter_picked_stations(self): def scatter_picked_stations(self):
picks, lats, lons = self.get_picks_lat_lon() picks, uncertainties, lats, lons = self.get_picks_lat_lon()
if len(lons) < 1 and len(lats) < 1: if len(lons) < 1 and len(lats) < 1:
return return
phase = self.comboBox_phase.currentText()
timeerrors = self.parameter['timeerrors{}'.format(phase)]
sizes = np.array([self.pointsize * ((5. - get_quality_class(uncertainty, timeerrors)))
for uncertainty in uncertainties])
cmap = self.get_colormap() cmap = self.get_colormap()
# workaround because of an issue with latlon transformation of arrays with len <3 # workaround because of an issue with latlon transformation of arrays with len <3
if len(lons) <= 2 and len(lats) <= 2: if len(lons) <= 2 and len(lats) <= 2:
self.sc_picked = self.basemap.scatter(lons[0], lats[0], s=self.pointsize, edgecolors='white', cmap=cmap, self.sc_picked = self.basemap.scatter(lons[0], lats[0], s=sizes, edgecolors='white', cmap=cmap,
c=picks[0], latlon=True, zorder=11) c=picks[0], latlon=True, zorder=11)
if len(lons) == 2 and len(lats) == 2: if len(lons) == 2 and len(lats) == 2:
self.sc_picked = self.basemap.scatter(lons[1], lats[1], s=self.pointsize, edgecolors='white', cmap=cmap, self.sc_picked = self.basemap.scatter(lons[1], lats[1], s=sizes, edgecolors='white', cmap=cmap,
c=picks[1], latlon=True, zorder=11) c=picks[1], latlon=True, zorder=11)
if len(lons) > 2 and len(lats) > 2: if len(lons) > 2 and len(lats) > 2:
self.sc_picked = self.basemap.scatter(lons, lats, s=self.pointsize, edgecolors='white', cmap=cmap, self.sc_picked = self.basemap.scatter(lons, lats, s=sizes, edgecolors='white', cmap=cmap,
c=picks, latlon=True, zorder=11, label='Picked') c=picks, latlon=True, zorder=11, label='Picked')
def annotate_ax(self): def annotate_ax(self):
@ -512,6 +532,13 @@ class Array_map(QtGui.QWidget):
self.init_colormap() self.init_colormap()
self.draw_everything() self.draw_everything()
def switch_annotations(self):
if self.annotations_box.isChecked():
self.annotate = True
else:
self.annotate = False
self._refresh_drawings()
def draw_everything(self): def draw_everything(self):
picktype = self.comboBox_am.currentText() picktype = self.comboBox_am.currentText()
picks_available = (self.picks_dict and picktype == 'manual') \ picks_available = (self.picks_dict and picktype == 'manual') \
@ -531,6 +558,7 @@ class Array_map(QtGui.QWidget):
self.comboBox_phase.setEnabled(True) self.comboBox_phase.setEnabled(True)
else: else:
self.comboBox_phase.setEnabled(False) self.comboBox_phase.setEnabled(False)
if self.annotate:
self.annotate_ax() self.annotate_ax()
self.canvas.draw() self.canvas.draw()
@ -575,6 +603,7 @@ class Array_map(QtGui.QWidget):
def remove_annotations(self): def remove_annotations(self):
for annotation in self.annotations: for annotation in self.annotations:
annotation.remove() annotation.remove()
self.annotations = []
def zoom(self, event): def zoom(self, event):
map = self.basemap map = self.basemap

11
pylot/core/util/generate_array_maps.py
View File

@ -20,8 +20,8 @@ def main(project_file_path, manual=False, auto=True, file_format='png', f_ext=''
#if not eventdir.endswith('20170908_044946.a'): #if not eventdir.endswith('20170908_044946.a'):
# continue # continue
# MP MP ---- # MP MP ----
kwargs = dict(event=event, nEvents=nEvents, index=index, manual=manual, auto=auto, file_format=file_format, kwargs = dict(project=project, event=event, nEvents=nEvents, index=index, manual=manual, auto=auto,
f_ext=f_ext) file_format=file_format, f_ext=f_ext)
input_list.append(kwargs) input_list.append(kwargs)
if ncores == 1: if ncores == 1:
@ -51,7 +51,8 @@ def array_map_worker(input_dict):
# create figure to plot on # create figure to plot on
fig = plt.figure(figsize=(16,9)) fig = plt.figure(figsize=(16,9))
# create array map object # create array map object
map = Array_map(None, metadata, figure=fig, width=2.13e6, height=1.2e6, pointsize=15., linewidth=1.0) map = Array_map(None, metadata, parameter=input_dict['project'].parameter, figure=fig,
width=2.13e6, height=1.2e6, pointsize=15., linewidth=1.0)
# set combobox to auto/manual to plot correct pick type # set combobox to auto/manual to plot correct pick type
map.comboBox_am.setCurrentIndex(map.comboBox_am.findText(pick_type)) map.comboBox_am.setCurrentIndex(map.comboBox_am.findText(pick_type))
# add picks to map and save file # add picks to map and save file
@ -62,6 +63,6 @@ def array_map_worker(input_dict):
print('Wrote file: {}'.format(fpath_out)) print('Wrote file: {}'.format(fpath_out))
if __name__ == '__main__': if __name__ == '__main__':
#main('/home/marcel/pylot_m7_mantle_correlated.plp', f_ext='_0.5Hz') main('/home/marcel/alparray_m6.0-6.4_mantle_correlated_v3.plp', f_ext='_correlated_0.5Hz', ncores=40)
main('E:\Shared\AlpArray\\test_aa.plp', f_ext='_correlated_0.5Hz', ncores=1) #main('E:\Shared\AlpArray\\test_aa.plp', f_ext='_correlated_0.5Hz', ncores=1)
#main('/home/marcel/alparray_m6.5-6.9_mantle_correlated_v3.plp', f_ext='_correlated_0.5Hz') #main('/home/marcel/alparray_m6.5-6.9_mantle_correlated_v3.plp', f_ext='_correlated_0.5Hz')