[edit] inserted verbosity option to control the amount of output

pylot/core/io/inputs.py

@@ -36,7 +36,7 @@ class AutoPickParameter(object):
     ==========  ==========  =======================================
     '''
 
-    def __init__(self, fnin=None, fnout=None, **kwargs):
+    def __init__(self, fnin=None, fnout=None, verbosity=0, **kwargs):
         '''
         Initialize parameter object:
 
@@ -60,6 +60,7 @@ class AutoPickParameter(object):
                 parspl = line.split('\t')[:2]
                 parFileCont[parspl[0].strip()] = parspl[1]
         except IndexError as e:
+            if verbosity > 0:
                 self._printParameterError(e)
             inputFile.seek(0)
             lines = inputFile.readlines()

pylot/core/io/phases.py

@@ -262,18 +262,23 @@ def picks_from_picksdict(picks):
                 else:
                     pick.polarity = 'undecidable'
             except KeyError as e:
-                print(e.message, 'No polarity information found for %s' % phase)
+                if 'fm' in e.message: # no polarity information found for this phase
+                    pass
+                else:
+                    raise e
             picks_list.append(pick)
     return picks_list
 
 
-def reassess_pilot_db(root_dir, out_dir=None, fn_param=None):
+def reassess_pilot_db(root_dir, out_dir=None, fn_param=None, verbosity=0):
     import glob
 
     evt_list = glob.glob1(root_dir,'e????.???.??')
 
     for evt in evt_list:
-        reassess_pilot_event(root_dir, evt, out_dir, fn_param)
+        if verbosity > 0:
+            print('Reassessing event {0}'.format(evt))
+        reassess_pilot_event(root_dir, evt, out_dir, fn_param, verbosity)
 
 
 
@@ -287,15 +292,17 @@ def reassess_pilot_event(root_dir, event_id, out_dir=None, fn_param=None, verbos
         import pylot.core.util.defaults as defaults
         fn_param = defaults.AUTOMATIC_DEFAULTS
 
-    default = AutoPickParameter(fn_param)
+    default = AutoPickParameter(fn_param, verbosity)
 
     search_base = os.path.join(root_dir, event_id)
     phases_file = glob.glob(os.path.join(search_base, 'PHASES.mat'))
     if not phases_file:
         return
-    #print('Opening PILOT phases file: {fn}'.format(fn=phases_file[0]))
+    if verbosity > 1:
+        print('Opening PILOT phases file: {fn}'.format(fn=phases_file[0]))
     picks_dict = picks_from_pilot(phases_file[0])
-    #print('Dictionary read from PHASES.mat:\n{0}'.format(picks_dict))
+    if verbosity > 0:
+        print('Dictionary read from PHASES.mat:\n{0}'.format(picks_dict))
     datacheck = list()
     info = None
     for station in picks_dict.keys():
@@ -314,6 +321,7 @@ def reassess_pilot_event(root_dir, event_id, out_dir=None, fn_param=None, verbos
                 raise ValueError(e.message)
         except Exception as e:
             if 'No file matching file pattern:' in e.message:
+                if verbosity > 0:
                     warnings.warn('no waveform data found for station {station}'.format(station=station), RuntimeWarning)
                 datacheck.append(fn_pattern + ' (no data)\n')
                 continue
@@ -348,6 +356,7 @@ def reassess_pilot_event(root_dir, event_id, out_dir=None, fn_param=None, verbos
             picks_dict[station][phase] = dict(epp=epp, mpp=mpp, lpp=lpp, spe=spe)
     if datacheck:
         if info:
+            if verbosity > 0:
                 print(info + ': {0}'.format(search_base))
         fncheck = open(os.path.join(search_base, 'datacheck_list'), 'w')
         fncheck.writelines(datacheck)

scripts/pylot-reasses-pilot-db.py

@@ -23,11 +23,17 @@ if __name__ == '__main__':
                                             'most cases PILOT database folder)'
     )
     parser.add_argument(
-        '--output', '-o', type=str, help='path to the output directory', dest='output'
+        '--output', '-o', type=str, help='path to the output directory',
+        dest='output'
     )
     parser.add_argument(
-        '--parameterfile', '-p', type=str, help='full path to the parameterfile', dest='parfile'
+        '--parameterfile', '-p', type=str,
+        help='full path to the parameterfile', dest='parfile'
+    )
+    parser.add_argument(
+        '--verbosity', '-v', action='count', help='increase output verbosity',
+        default=0, dest='verbosity'
     )
 
     args = parser.parse_args()
-    reassess_pilot_db(args.dbroot, args.output, args.parfile)
+    reassess_pilot_db(args.dbroot, args.output, args.parfile, args.verbosity)