task: read also old autoPILOT parameter files
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@ -5,7 +5,7 @@
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class AutoPickParameter(object):
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class AutoPickParameter(object):
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'''
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'''
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AutoPickParameters is a parameter type object capable to read and/or write
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AutoPickParameters is a parameter type object capable to read and/or write
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parameter ASCII and binary files.
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parameter ASCII.
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:param fn str: Filename of the input file
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:param fn str: Filename of the input file
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@ -50,6 +50,16 @@ class AutoPickParameter(object):
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for line in lines:
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for line in lines:
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parspl = line.split('\t')[:2]
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parspl = line.split('\t')[:2]
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parFileCont[parspl[0].strip()] = parspl[1]
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parFileCont[parspl[0].strip()] = parspl[1]
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else:
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parFileCont = {}
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except Exception, e:
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self._printParameterError(e)
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inputFile.seek(0)
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lines = inputFile.readlines()
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for line in lines:
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if not line.startswith(('#', '%', '\n', ' ')):
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parspl = line.split('#')[:2]
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parFileCont[parspl[1].strip()] = parspl[0].strip()
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for key, value in parFileCont.iteritems():
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for key, value in parFileCont.iteritems():
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try:
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try:
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val = int(value)
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val = int(value)
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@ -57,8 +67,8 @@ class AutoPickParameter(object):
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try:
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try:
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val = float(value)
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val = float(value)
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except:
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except:
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if value.find(';') > 0:
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if len(value.split(' ')) > 1:
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vallist = value.strip().split(';')
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vallist = value.strip().split(' ')
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val = []
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val = []
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for val0 in vallist:
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for val0 in vallist:
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val0 = float(val0)
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val0 = float(val0)
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@ -66,11 +76,6 @@ class AutoPickParameter(object):
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else:
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else:
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val = str(value.strip())
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val = str(value.strip())
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parFileCont[key] = val
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parFileCont[key] = val
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else:
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parFileCont = {}
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except Exception, e:
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self._printParameterError(e)
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parFileCont = {}
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self.__parameter = parFileCont
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self.__parameter = parFileCont
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# Human-readable string representation of the object
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# Human-readable string representation of the object
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@ -129,7 +134,7 @@ class AutoPickParameter(object):
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print self
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print self
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def _printParameterError(self, errmsg):
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def _printParameterError(self, errmsg):
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print 'ParameterError:\n non-existent parameter %s' % errmsg
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print 'ParameterReadError:\n non-existent parameter %s' % errmsg
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class FilterOptions(object):
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class FilterOptions(object):
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