Merge remote-tracking branch 'origin/develop' into develop
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commit
5a3b77dc7b
@ -1311,11 +1311,13 @@ class MainWindow(QMainWindow):
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% self.infile)
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autopick_parameter = self._inputs
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self.addListItem(str(autopick_parameter))
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ep = self.get_current_event_path().split('/')
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eventid = ep[len(ep) - 1]
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self.thread = AutoPickThread(parent=self,
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func=autoPyLoT,
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infile = self.infile,
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fnames=self.fnames,
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eventid=eventid,
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savepath=self.autosave)
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self.thread.message.connect(self.addListItem)
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33
autoPyLoT.py
33
autoPyLoT.py
@ -8,7 +8,6 @@ import glob
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import os
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import datetime
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from obspy import read_events
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import pylot.core.loc.hyposat as hyposat
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import pylot.core.loc.hypo71 as hypo71
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import pylot.core.loc.velest as velest
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@ -29,7 +28,7 @@ from pylot.core.util.version import get_git_version as _getVersionString
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__version__ = _getVersionString()
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def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, savepath=None, station='all', iplot=0):
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def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, eventid=None, savepath=None, station='all', iplot=0):
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"""
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Determine phase onsets automatically utilizing the automatic picking
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algorithms by Kueperkoch et al. 2010/2012.
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@ -141,7 +140,9 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, save
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events = glob.glob(os.path.join(datapath, parameter.get('eventID')))
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else:
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# autoPyLoT was initialized from GUI
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events = fnames
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events = [os.path.join(datapath, eventid)]
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evID = eventid
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locflag = 2
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for event in events:
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if fnames == 'None':
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@ -162,14 +163,14 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, save
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parameter.setParam(eventID=eventID)
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else:
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data.setWFData(fnames)
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event = savepath
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now = datetime.datetime.now()
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evID = '%d%02d%02d%02d%02d' % (now.year,
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now.month,
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now.day,
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now.hour,
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now.minute)
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parameter.setParam(eventID=evID)
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event = events[0]
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#now = datetime.datetime.now()
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#evID = '%d%02d%02d%02d%02d' % (now.year,
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# now.month,
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# now.day,
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# now.hour,
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# now.minute)
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parameter.setParam(eventID=eventid)
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wfdat = data.getWFData() # all available streams
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if not station == 'all':
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wfdat = wfdat.select(station=station)
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@ -178,6 +179,7 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, save
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return
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wfdat = remove_underscores(wfdat)
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metadata = read_metadata(parameter.get('invdir'))
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print("Restitute data ...")
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corr_dat = restitute_data(wfdat.copy(), *metadata)
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print('Working on event %s. Stations: %s' % (event, station))
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@ -192,7 +194,7 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, save
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picks = autopickevent(wfdat, parameter, iplot=iplot)
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##########################################################
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# locating
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if locflag == 1:
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if locflag > 0:
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# write phases to NLLoc-phase file
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nll.export(picks, phasefile, parameter)
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@ -282,6 +284,7 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, save
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print("autoPyLoT: No more bad onsets found, stop iterative picking!")
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nlloccounter = maxnumit
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evt = read_events(nllocfile)[0]
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if locflag < 2:
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# calculating seismic moment Mo and moment magnitude Mw
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moment_mag = MomentMagnitude(corr_dat, evt, parameter.get('vp'),
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parameter.get('Qp'),
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@ -361,6 +364,9 @@ if __name__ == "__main__":
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parser.add_argument('-f', '-F', '--fnames', type=str,
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action='store',
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help='''optional, list of data file names''')
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parser.add_argument('-e', '-E', '--eventid', type=str,
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action='store',
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help='''optional, event ID''')
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# parser.add_argument('-p', '-P', '--plot', action='store',
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# help='show interactive plots')
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parser.add_argument('-s', '-S', '--spath', type=str,
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@ -373,4 +379,5 @@ if __name__ == "__main__":
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cla = parser.parse_args()
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picks, mainFig = autoPyLoT(inputfile=str(cla.inputfile),
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fnames=str(cla.fnames), savepath=str(cla.spath))
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fnames=str(cla.fnames), eventid=str(cla.eventid),
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savepath=str(cla.spath))
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@ -8,18 +8,19 @@ class AutoPickThread(QThread):
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message = Signal(str)
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finished = Signal()
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def __init__(self, parent, func, infile, fnames, savepath):
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def __init__(self, parent, func, infile, fnames, eventid, savepath):
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super(AutoPickThread, self).__init__()
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self.setParent(parent)
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self.func = func
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self.infile = infile
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self.fnames = fnames
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self.eventid = eventid
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self.savepath = savepath
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def run(self):
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sys.stdout = self
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picks = self.func(self.infile, self.fnames, self.savepath)
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picks = self.func(None, None, self.infile, self.fnames, self.eventid, self.savepath)
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print("Autopicking finished!\n")
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