Merge branch 'develop' of ariadne.geophysik.ruhr-uni-bochum.de:/data/git/pylot into develop

autoPyLoT.py

@@ -65,8 +65,8 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, even
                 \n
                 Authors:\n
                 L. Kueperkoch (BESTEC GmbH, Landau i. d. Pfalz)\n
-                S. Wehling-Benatelli (Ruhr-Universitaet Bochum)\n
                 M. Paffrath (Ruhr-Universitaet Bochum)\n
+                S. Wehling-Benatelli (Ruhr-Universitaet Bochum)\n
                 
                 {sp}
                 ***********************************'''.format(version=_getVersionString(),
@@ -456,7 +456,7 @@ if __name__ == "__main__":
                         parameters for autoPyLoT''')
     parser.add_argument('-p', '-P', '--iplot', type=int, 
                         action='store',
-                        help='''Boolean flag for plotting: 0=none, 1=partial, 2=all''') 
+                        help='''optional, logical variable for plotting: 0=none, 1=partial, 2=all''') 
     parser.add_argument('-f', '-F', '--fnames', type=str,
                         action='store',
                         help='''optional, list of data file names''')
@@ -468,7 +468,7 @@ if __name__ == "__main__":
                         help='''optional, save path for autoPyLoT output''')
     parser.add_argument('-c', '-C', '--ncores', type=int,
                         action='store', default=0,
-                        help='''optional, number of CPU cores used for parallel processing (default: all available)''')
+                        help='''optional, number of CPU cores used for parallel processing (default: all available(=0))''')
 
     cla = parser.parse_args()
 

pylot/core/pick/autopick.py

@@ -28,6 +28,14 @@ def autopickevent(data, param, iplot=0, fig_dict=None, ncores=0, metadata=None,
     stations = []
     all_onsets = {}
     input_tuples = []
+    try:
+        iplot = int(iplot)
+    except:
+        if iplot == True or iplot == 'True':
+           iplot = 2
+        else:
+           iplot = 0
+
 
     # get some parameters for quality control from
     # parameter input file (usually autoPyLoT.in).
@@ -44,7 +52,7 @@ def autopickevent(data, param, iplot=0, fig_dict=None, ncores=0, metadata=None,
     for station in stations:
         topick = data.select(station=station)
 
-        if not iplot:
+        if iplot == None or iplot == 'None' or iplot == 0:
             input_tuples.append((topick, param, apverbose, metadata, origin))
         if iplot > 0:
             all_onsets[station] = autopickstation(topick, param, verbose=apverbose,
@@ -756,9 +764,17 @@ def autopickstation(wfstream, pickparam, verbose=False,
               'bad P onset, skipping S picking!')
 
     ##############################################################
+    try:
+       iplot = int(iplot)
+    except:
+       if iplot == True or iplot == 'True':
+           iplot = 2
+       else:
+           iplot = 0
+
     if iplot > 0:
         # plot vertical trace
-        if not fig_dict:
+        if fig_dict == None or fig_dict == 'None':
             fig = plt.figure()
             plt_flag = 1
         else:

pylot/core/pick/picker.py

@@ -155,6 +155,14 @@ class AICPicker(AutoPicker):
         self.slope = None
         self.SNR = None
         plt_flag = 0
+        try:
+            iplot = int(self.iplot)
+        except:
+            if self.iplot == True or self.iplot == 'True':
+               iplot = 2
+            else:
+               iplot = 0
+
         # find NaN's
         nn = np.isnan(self.cf)
         if len(nn) > 1:
@@ -243,7 +251,7 @@ class AICPicker(AutoPicker):
                     print("AICPicker: Maximum for slope determination right at the beginning of the window!")
                     print("Choose longer slope determination window!")
                     if self.iplot > 1:
-                        if not self.fig:
+                        if self.fig == None or self.fig == 'None':
                             fig = plt.figure()  # self.iplot) ### WHY? MP MP
                             plt_flag = 1
                         else:
@@ -276,8 +284,8 @@ class AICPicker(AutoPicker):
             self.SNR = None
             self.slope = None
 
-        if self.iplot > 1:
+        if iplot > 1:
-            if not self.fig:
+            if self.fig == None or self.fig == 'None':
                 fig = plt.figure()  # self.iplot)
                 plt_flag = 1
             else:
@@ -338,6 +346,14 @@ class PragPicker(AutoPicker):
 
     def calcPick(self):
 
+        try:
+            iplot = int(self.getiplot())
+        except:
+            if self.getiplot() == True or self.getiplot() == 'True':
+               iplot = 2
+            else:
+               iplot = 0
+
         if self.getpick1() is not None:
             print('PragPicker: Get most likely pick from HOS- or AR-CF using pragmatic picking algorithm ...')
 
@@ -421,8 +437,8 @@ class PragPicker(AutoPicker):
                 self.Pick = None
                 pickflag = 0
 
-            if self.getiplot() > 1:
+            if iplot > 1:
-                if not self.fig:
+                if self.fig == None or self.fig == 'None':
                     fig = plt.figure()  # self.getiplot())
                     plt_flag = 1
                 else:

pylot/core/pick/utils.py

@@ -51,6 +51,14 @@ def earllatepicker(X, nfac, TSNR, Pick1, iplot=0, verbosity=1, fig=None):
     EPick = None
     PickError = None
     plt_flag = 0
+    try:
+        iplot = int(iplot)
+    except:
+        if iplot == True or iplot == 'True':
+           iplot = 2
+        else:
+           iplot = 0
+
     if verbosity:
         print('earllatepicker: Get earliest and latest possible pick'
               ' relative to most likely pick ...')
@@ -119,7 +127,7 @@ def earllatepicker(X, nfac, TSNR, Pick1, iplot=0, verbosity=1, fig=None):
     PickError = symmetrize_error(diffti_te, diffti_tl)
 
     if iplot > 1:
-        if not fig:
+        if fig == None or fig == 'None':
             fig = plt.figure()  # iplot)
             plt_flag = 1
         ax = fig.add_subplot(111)
@@ -174,6 +182,14 @@ def fmpicker(Xraw, Xfilt, pickwin, Pick, iplot=0, fig=None):
     '''
 
     plt_flag = 0
+    try:
+        iplot = int(iplot)
+    except:
+        if iplot == True or iplot == 'True':
+           iplot = 2
+        else:
+           iplot = 0
+
     warnings.simplefilter('ignore', np.RankWarning)
 
     assert isinstance(Xraw, Stream), "%s is not a stream object" % str(Xraw)
@@ -297,7 +313,7 @@ def fmpicker(Xraw, Xfilt, pickwin, Pick, iplot=0, fig=None):
         print("fmpicker: Found polarity %s" % FM)
 
     if iplot > 1:
-        if not fig:
+        if fig == None or fig == 'None':
             fig = plt.figure()  # iplot)
             plt_flag = 1
         ax1 = fig.add_subplot(211)
@@ -698,6 +714,14 @@ def checksignallength(X, pick, TSNR, minsiglength, nfac, minpercent, iplot=0, fi
     '''
 
     plt_flag = 0
+    try:
+        iplot = int(self.iplot)
+    except:
+        if iplot == True or iplot == 'True':
+           iplot = 2
+        else:
+           iplot = 0
+
     assert isinstance(X, Stream), "%s is not a stream object" % str(X)
 
     print("Checking signal length ...")
@@ -740,7 +764,7 @@ def checksignallength(X, pick, TSNR, minsiglength, nfac, minpercent, iplot=0, fi
         returnflag = 0
 
     if iplot > 1:
-        if not fig:
+        if fig == None or fig == 'None':
             fig = plt.figure()  # iplot)
             plt_flag = 1
         ax = fig.add_subplot(111)