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Merge branch 'develop' of ariadne.geophysik.ruhr-uni-bochum.de:/data/git/pylot into develop

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This commit is contained in:
Marcel Paffrath 2015-11-05 10:14:34 +01:00
commit 5d378f9f0f
10 changed files with 177 additions and 36 deletions
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55
autoPyLoT.py
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@ -32,19 +32,17 @@ def autoPyLoT(inputfile):
.. rubric:: Example
"""
print '************************************'
print '*********autoPyLoT starting*********'
print 'The Python picking and Location Tool'
print ' Version ', _getVersionString(), '2015'
print ' '
print 'Authors:'
print 'S. Wehling-Benatelli'
print ' Ruhr-Universität Bochum'
print 'L. Küperkoch'
print ' BESTEC GmbH, Landau (Pfalz)'
print 'K. Olbert'
print ' Christian-Albrechts Universität Kiel'
print '************************************'
splash = '''************************************\n
*********autoPyLoT starting*********\n
The Python picking and Location Tool\n
Version {version} 2015\n
\n
Authors:\n
S. Wehling-Benatelli (Ruhr-Universität Bochum)\n
L. Küperkoch (BESTEC GmbH, Landau i. d. Pfalz)\n
K. Olbert (Christian-Albrechts Universität zu Kiel)\n
***********************************'''.format(version=_getVersionString())
print(splash)
# reading parameter file
@ -77,7 +75,7 @@ def autoPyLoT(inputfile):
# get path to NLLoc executable
nllocbin = parameter.getParam('nllocbin')
nlloccall = '%s/NLLoc' % nllocbin
# get name of phase file
# get name of phase file
phasef = parameter.getParam('phasefile')
phasefile = '%s/obs/%s' % (nllocroot, phasef)
# get name of NLLoc-control file
@ -99,8 +97,8 @@ def autoPyLoT(inputfile):
if not parameter.hasParam('eventID'):
for event in [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)]:
data.setWFData(glob.glob(os.path.join(datapath, event, '*')))
print 'Working on event %s' % event
print data
print('Working on event %s' % event)
print(data)
wfdat = data.getWFData() # all available streams
##########################################################
@ -113,7 +111,7 @@ def autoPyLoT(inputfile):
# write phases to NLLoc-phase file
writephases(picks, 'NLLoc', phasefile)
# For locating the events we have to modify the NLLoc-control file!
# For locating the event the NLLoc-control file has to be modified!
# create comment line for NLLoc-control file
# NLLoc-output file
nllocout = '%s/loc/%s_%s' % (nllocroot, event, nllocoutpatter)
@ -133,6 +131,10 @@ def autoPyLoT(inputfile):
# locate the event
subprocess.call([nlloccall, locfile])
##########################################################
# write phase files for various location routines
# HYPO71
hypo71file = '%s/%s/autoPyLoT_HYPO71.pha' % (datapath, eventID)
writephases(picks, 'HYPO71', hypo71file)
print '------------------------------------------'
print '-----Finished event %s!-----' % event
@ -148,14 +150,14 @@ def autoPyLoT(inputfile):
##########################################################
# !automated picking starts here!
picks = autopickevent(wfdat, parameter)
##########################################################
# locating
if locflag == 1:
# write phases to NLLoc-phase file
writephases(picks, 'NLLoc', phasefile)
# For locating the event we have to modify the NLLoc-control file!
# For locating the event the NLLoc-control file has to be modified!
# create comment line for NLLoc-control file NLLoc-output file
nllocout = '%s/loc/%s_%s' % (nllocroot, parameter.getParam('eventID'), nllocoutpatter)
locfiles = 'LOCFILES %s NLLOC_OBS %s %s 0' % (phasefile, ttpatter, nllocout)
@ -166,17 +168,20 @@ def autoPyLoT(inputfile):
filedata = nllfile.read()
if filedata.find(locfiles) < 0:
# replace old command
filedata = filedata.replace('LOCFILES', locfiles)
nllfile = open(locfile, 'w')
nllfile.write(filedata)
nllfile.close()
filedata = filedata.replace('LOCFILES', locfiles)
nllfile = open(locfile, 'w')
nllfile.write(filedata)
nllfile.close()
# locate the event
subprocess.call([nlloccall, locfile])
##########################################################
# write phase files for various location routines
# HYPO71
hypo71file = '%s/%s/autoPyLoT_HYPO71.pha' % (datapath, parameter.getParam('eventID'))
writephases(picks, 'HYPO71', hypo71file)
print '------------------------------------------'
print '-------Finished event %s!-------' % parameter.getParam('eventID')
print '------------------------------------------'

8
autoPyLoT_local.in
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@ -9,15 +9,15 @@ EVENT_DATA/LOCAL #datapath# %data path
2013.02_Insheim #database# %name of data base
e0019.048.13 #eventID# %event ID for single event processing
/DATA/Insheim/STAT_INFO #invdir# %full path to inventory or dataless-seed file
PILOT #datastructure# %choose data structure
0 #iplot# %flag for plotting: 0 none, 1, partly, >1 everything
PILOT #datastructure#%choose data structure
0 #iplot# %flag for plotting: 0 none, 1 partly, >1 everything
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
#NLLoc settings
#NLLoc settings#
/home/ludger/NLLOC #nllocbin# %path to NLLoc executable
/home/ludger/NLLOC/Insheim #nllocroot# %root of NLLoc-processing directory
AUTOPHASES.obs #phasefile# %name of autoPyLoT-output phase file for NLLoc
%(in nllocroot/obs)
Insheim_min1d2015.in #locfile# %name of autoPyLoT-output control file for NLLoc
Insheim_min1d2015_auto.in #locfile# %name of autoPyLoT-output control file for NLLoc
%(in nllocroot/run)
ttime #ttpatter# %pattern of NLLoc ttimes from grid
%(in nllocroot/times)

2
autoPyLoT_regional.in
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@ -88,7 +88,7 @@ ARH #algoS# %choose algorithm for S-onset
2.5 #noisefactor# %noiselevel*noisefactor=threshold
60 #minpercent# %required percentage of samples higher than threshold
#check for spuriously picked S-onsets#
1.0 #zfac# %P-amplitude must exceed at least zfac times RMS-S amplitude
0.5 #zfac# %P-amplitude must exceed at least zfac times RMS-S amplitude
#check statistics of P onsets#
45 #mdttolerance# %maximum allowed deviation of P picks from median [s]
#wadati check#

2
pylot/RELEASE-VERSION
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@ -1 +1 @@
ac7d-dirty
a31e-dirty

2
pylot/core/loc/__init__.py Normal file
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@ -0,0 +1,2 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-

2
pylot/core/loc/hsat.py Normal file
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@ -0,0 +1,2 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-

60
pylot/core/loc/nll.py Normal file
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@ -0,0 +1,60 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import subprocess
from obspy.core.event import readEvents
from pylot.core.pick.utils import writephases
def picksExport(picks, phasefile):
'''
Take <picks> dictionary and exports picking data to a NLLOC-obs <phasefile> without creating an ObsPy event object.
:param picks: picking data dictionary
:type picks: dict
:param phasefile: complete path to the exporting obs file
:type phasefile: str
'''
# write phases to NLLoc-phase file
writephases(picks, 'NLLoc', phasefile)
def modfiyInputFile(fn, root, outpath, phasefile, tttable):
'''
:param fn:
:param root:
:param outpath:
:param phasefile:
:param tttable:
:return:
'''
# For locating the event we have to modify the NLLoc-control file!
# create comment line for NLLoc-control file NLLoc-output file
print ("Modifying NLLoc-control file %s ..." % fn)
nllocout = '%s/loc/%s_%s' % (root, outpath)
locfiles = 'LOCFILES %s NLLOC_OBS %s %s 0' % (phasefile, tttable, nllocout)
# modification of NLLoc-control file
nllfile = open(fn, 'r')
filedata = nllfile.read()
if filedata.find(locfiles) < 0:
# replace old command
filedata = filedata.replace('LOCFILES', locfiles)
nllfile = open(fn, 'w')
nllfile.write(filedata)
nllfile.close()
def locate(call, fnin):
'''
Takes paths to NLLoc executable <call> and input parameter file <fnin> and starts the location calculation.
:param call: full path to NLLoc executable
:type call: str
:param fnin: full path to input parameter file
:type fnin: str
'''
# locate the event
subprocess.call([call, fnin])
def readLocation(fn):
pass
if __name__=='__main__':
pass

2
pylot/core/loc/velest.py Normal file
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@ -0,0 +1,2 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-

3
pylot/core/pick/autopick.py
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@ -335,7 +335,8 @@ def autopickstation(wfstream, pickparam):
"no zero crossings derived!")
print ("Cannot calculate source spectrum!")
else:
calcwin = (zc[3] - zc[0]) * z_copy[0].stats.delta
index = min([3, len(zc) - 1])
calcwin = (zc[index] - zc[0]) * z_copy[0].stats.delta
# calculate source spectrum and get w0 and fc
specpara = DCfc(z_copy, mpickP, calcwin, iplot)
w0 = specpara.getw0()

77
pylot/core/pick/utils.py
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@ -8,7 +8,7 @@
:author: Ludger Kueperkoch / MAGS2 EP3 working group
"""
import pdb
import numpy as np
import matplotlib.pyplot as plt
from obspy.core import Stream, UTCDateTime
@ -937,7 +937,7 @@ def writephases(arrivals, fformat, filename):
Function of methods to write phases to the following standard file
formats used for locating earthquakes:
HYPO71, NLLoc, VELEST, HYPOSAT, HYPOINVERSE and hypoDD
HYPO71, NLLoc, VELEST, HYPOSAT, and hypoDD
:param: arrivals
:type: dictionary containing all phase information including
@ -999,11 +999,80 @@ def writephases(arrivals, fformat, filename):
mm,
ss_ms))
fid.close()
elif fformat == 'HYPO71':
print ("Writing phases to %s for HYPO71" % filename)
fid = open("%s" % filename, 'w')
# write header
fid.write(' EQ001\n')
for key in arrivals:
if arrivals[key]['P']['weight'] < 4:
Ponset = arrivals[key]['P']['mpp']
Sonset = arrivals[key]['S']['mpp']
pweight = arrivals[key]['P']['weight']
sweight = arrivals[key]['S']['weight']
fm = arrivals[key]['P']['fm']
if fm is None:
fm = '-'
Ao = arrivals[key]['S']['Ao']
if Ao is None:
Ao = ''
else:
Ao = str('%7.2f' % Ao)
year = Ponset.year
if year >= 2000:
year = year -2000
else:
year = year - 1900
month = Ponset.month
day = Ponset.day
hh = Ponset.hour
mm = Ponset.minute
ss = Ponset.second
ms = Ponset.microsecond
ss_ms = ss + ms / 1000000.0
if pweight < 2:
pstr = 'I'
elif pweight >= 2:
pstr = 'E'
if arrivals[key]['S']['weight'] < 4:
Sss = Sonset.second
Sms = Sonset.microsecond
Sss_ms = Sss + Sms / 1000000.0
Sss_ms = str('%5.02f' % Sss_ms)
if sweight < 2:
sstr = 'I'
elif sweight >= 2:
sstr = 'E'
fid.write('%s%sP%s%d %02d%02d%02d%02d%02d%5.2f %s%sS %d %s\n' % (key,
pstr,
fm,
pweight,
year,
month,
day,
hh,
mm,
ss_ms,
Sss_ms,
sstr,
sweight,
Ao))
else:
fid.write('%s%sP%s%d %02d%02d%02d%02d%02d%5.2f %s\n' % (key,
pstr,
fm,
pweight,
year,
month,
day,
hh,
mm,
ss_ms,
Ao))
fid.close()
if __name__ == '__main__':