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Merge branch 'feature/dae' into develop

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# Conflicts:
#	pylot/core/io/data.py
#	pylot/core/util/widgets.py
This commit is contained in:
Marcel Paffrath 2024-06-12 16:19:21 +02:00
commit 6cce05b035
4 changed files with 218 additions and 139 deletions
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38
PyLoT.py
View File

@ -178,6 +178,7 @@ class MainWindow(QMainWindow):
self.autodata = Data(self)
self.fnames = None
self.fnames_comp = None
self._stime = None
# track deleted picks for logging
@ -1129,16 +1130,19 @@ class MainWindow(QMainWindow):
else:
return
def getWFFnames_from_eventbox(self, eventbox=None):
def getWFFnames_from_eventbox(self, eventbox: str = None, subpath: str = None) -> list:
'''
Return waveform filenames from event in eventbox.
'''
# TODO: add dataStructure class for obspyDMT here, this is just a workaround!
eventpath = self.get_current_event_path(eventbox)
basepath = eventpath.split(os.path.basename(eventpath))[0]
if subpath:
eventpath = os.path.join(eventpath, subpath)
if not os.path.isdir(eventpath):
return []
if self.dataStructure:
if not eventpath:
return
return []
fnames = [os.path.join(eventpath, f) for f in os.listdir(eventpath)]
else:
raise DatastructureError('not specified')
@ -1960,13 +1964,20 @@ class MainWindow(QMainWindow):
def prepareLoadWaveformData(self):
self.fnames = self.getWFFnames_from_eventbox()
self.fnames_syn = []
self.fnames_comp = []
fnames_comp = self.getWFFnames_from_eventbox(subpath='compare')
self.dataPlot.activateCompareOptions(bool(fnames_comp))
if fnames_comp:
if self.dataPlot.comp_checkbox.isChecked():
self.fnames_comp = fnames_comp
eventpath = self.get_current_event_path()
basepath = eventpath.split(os.path.basename(eventpath))[0]
self.obspy_dmt = check_obspydmt_structure(basepath)
self.dataPlot.activateObspyDMToptions(self.obspy_dmt)
if self.obspy_dmt:
self.prepareObspyDMT_data(eventpath)
self.dataPlot.activateCompareOptions(True)
def loadWaveformData(self):
'''
@ -1999,7 +2010,7 @@ class MainWindow(QMainWindow):
tstop = None
self.data.setWFData(self.fnames,
self.fnames_syn,
self.fnames_comp,
checkRotated=True,
metadata=self.metadata,
tstart=tstart,
@ -2007,7 +2018,7 @@ class MainWindow(QMainWindow):
def prepareObspyDMT_data(self, eventpath):
qcbox_processed = self.dataPlot.qcombo_processed
qcheckb_syn = self.dataPlot.syn_checkbox
qcheckb_syn = self.dataPlot.comp_checkbox
qcbox_processed.setEnabled(False)
qcheckb_syn.setEnabled(False)
for fpath in os.listdir(eventpath):
@ -2015,8 +2026,8 @@ class MainWindow(QMainWindow):
if 'syngine' in fpath:
eventpath_syn = os.path.join(eventpath, fpath)
qcheckb_syn.setEnabled(True)
if self.dataPlot.syn_checkbox.isChecked():
self.fnames_syn = [os.path.join(eventpath_syn, filename) for filename in os.listdir(eventpath_syn)]
if self.dataPlot.comp_checkbox.isChecked():
self.fnames_comp = [os.path.join(eventpath_syn, filename) for filename in os.listdir(eventpath_syn)]
if 'processed' in fpath:
qcbox_processed.setEnabled(True)
if qcbox_processed.isEnabled():
@ -2297,7 +2308,7 @@ class MainWindow(QMainWindow):
comp = self.getComponent()
title = 'section: {0} components'.format(zne_text[comp])
wfst = self.get_data().getWFData()
wfsyn = self.get_data().getSynWFData()
wfsyn = self.get_data().getAltWFdata()
if self.filterActionP.isChecked() and filter:
self.filterWaveformData(plot=False, phase='P')
elif self.filterActionS.isChecked() and filter:
@ -2609,18 +2620,21 @@ class MainWindow(QMainWindow):
print("Warning! No network, station, and location info available!")
return
self.update_status('picking on station {0}'.format(station))
data = self.get_data().getOriginalWFData().copy()
wfdata = self.get_data().getOriginalWFData().copy()
wfdata_comp = self.get_data().getAltWFdata().copy()
event = self.get_current_event()
wftype = self.dataPlot.qcombo_processed.currentText() if self.obspy_dmt else None
pickDlg = PickDlg(self, parameter=self._inputs,
data=data.select(station=station),
data=wfdata.select(station=station),
data_compare=wfdata_comp.select(station=station),
station=station, network=network,
location=location,
picks=self.getPicksOnStation(station, 'manual'),
autopicks=self.getPicksOnStation(station, 'auto'),
metadata=self.metadata, event=event,
model=self.inputs.get('taup_model'),
filteroptions=self.filteroptions, wftype=wftype)
filteroptions=self.filteroptions, wftype=wftype,
show_comp_data=self.dataPlot.comp_checkbox.isChecked())
if self.filterActionP.isChecked():
pickDlg.currentPhase = "P"
pickDlg.filterWFData()

31
pylot/core/io/data.py
View File

@ -450,10 +450,11 @@ class Data(object):
data.filter(**kwargs)
self.dirty = True
def setWFData(self, fnames, fnames_syn=None, checkRotated=False, metadata=None, tstart=0, tstop=0):
def setWFData(self, fnames, fnames_alt=None, checkRotated=False, metadata=None, tstart=0, tstop=0):
"""
Clear current waveform data and set given waveform data
:param fnames: waveform data names to append
:param fnames_alt: alternative data to show (e.g. synthetic/processed)
:type fnames: list
"""
def check_fname_exists(filenames: list) -> list:
@ -463,14 +464,16 @@ class Data(object):
self.wfdata = Stream()
self.wforiginal = None
self.wfsyn = Stream()
self.wf_alt = Stream()
if tstart == tstop:
tstart = tstop = None
self.tstart = tstart
self.tstop = tstop
# remove directories
fnames = check_fname_exists(fnames)
fnames_syn = check_fname_exists(fnames_syn)
fnames_alt = check_fname_exists(fnames_alt)
# if obspy_dmt:
# wfdir = 'raw'
# self.processed = False
@ -488,8 +491,8 @@ class Data(object):
# wffnames = fnames
if fnames is not None:
self.appendWFData(fnames)
if fnames_syn is not None:
self.appendWFData(fnames_syn, synthetic=True)
if fnames_alt is not None:
self.appendWFData(fnames_alt, alternative=True)
else:
return False
@ -511,7 +514,7 @@ class Data(object):
self.dirty = False
return True
def appendWFData(self, fnames, synthetic=False):
def appendWFData(self, fnames, alternative=False):
"""
Read waveform data from fnames and append it to current wf data
:param fnames: waveform data to append
@ -524,20 +527,20 @@ class Data(object):
if self.dirty:
self.resetWFData()
real_or_syn_data = {True: self.wfsyn,
False: self.wfdata}
orig_or_alternative_data = {True: self.wf_alt,
False: self.wfdata}
warnmsg = ''
for fname in set(fnames):
try:
real_or_syn_data[synthetic] += read(fname, starttime=self.tstart, endtime=self.tstop)
orig_or_alternative_data[alternative] += read(fname, starttime=self.tstart, endtime=self.tstop)
except TypeError:
try:
real_or_syn_data[synthetic] += read(fname, format='GSE2', starttime=self.tstart, endtime=self.tstop)
orig_or_alternative_data[alternative] += read(fname, format='GSE2', starttime=self.tstart, endtime=self.tstop)
except Exception as e:
try:
real_or_syn_data[synthetic] += read(fname, format='SEGY', starttime=self.tstart,
endtime=self.tstop)
orig_or_alternative_data[alternative] += read(fname, format='SEGY', starttime=self.tstart,
endtime=self.tstop)
except Exception as e:
warnmsg += '{0}\n{1}\n'.format(fname, e)
except SacIOError as se:
@ -552,8 +555,8 @@ class Data(object):
def getOriginalWFData(self):
return self.wforiginal
def getSynWFData(self):
return self.wfsyn
def getAltWFdata(self):
return self.wf_alt
def resetWFData(self):
"""

10
pylot/core/util/array_map.py
View File

@ -474,17 +474,19 @@ class Array_map(QtWidgets.QWidget):
transform=ccrs.PlateCarree(), label='deleted'))
def openPickDlg(self, ind):
data = self._parent.get_data().getWFData()
wfdata = self._parent.get_data().getWFData()
wfdata_comp = self._parent.get_data().getWFDataComp()
for index in ind:
network, station = self._station_onpick_ids[index].split('.')[:2]
pyl_mw = self._parent
try:
data = data.select(station=station)
if not data:
wfdata = wfdata.select(station=station)
wfdata_comp = wfdata_comp.select(station=station)
if not wfdata:
self._warn('No data for station {}'.format(station))
return
pickDlg = PickDlg(self._parent, parameter=self.parameter,
data=data, network=network, station=station,
data=wfdata.copy(), data_compare=wfdata_comp.copy(), network=network, station=station,
picks=self._parent.get_current_event().getPick(station),
autopicks=self._parent.get_current_event().getAutopick(station),
filteroptions=self._parent.filteroptions, metadata=self.metadata,

278
pylot/core/util/widgets.py
View File

@ -795,7 +795,7 @@ class WaveformWidgetPG(QtWidgets.QWidget):
def connect_signals(self):
self.qcombo_processed.activated.connect(self.parent().newWF)
self.syn_checkbox.clicked.connect(self.parent().newWF)
self.comp_checkbox.clicked.connect(self.parent().newWF)
def init_labels(self):
self.label_layout.addWidget(self.status_label)
@ -806,13 +806,13 @@ class WaveformWidgetPG(QtWidgets.QWidget):
# use widgets as placeholder, so that child widgets keep position when others are hidden
mid_layout = QHBoxLayout()
right_layout = QHBoxLayout()
mid_layout.addWidget(self.syn_checkbox)
mid_layout.addWidget(self.comp_checkbox)
right_layout.addWidget(self.qcombo_processed)
mid_widget.setLayout(mid_layout)
right_widget.setLayout(right_layout)
self.label_layout.addWidget(mid_widget)
self.label_layout.addWidget(right_widget)
self.syn_checkbox.setLayoutDirection(Qt.RightToLeft)
self.comp_checkbox.setLayoutDirection(Qt.RightToLeft)
self.label_layout.setStretch(0, 4)
self.label_layout.setStretch(1, 0)
self.label_layout.setStretch(2, 0)
@ -827,7 +827,7 @@ class WaveformWidgetPG(QtWidgets.QWidget):
label = QtWidgets.QLabel()
self.perm_labels.append(label)
self.qcombo_processed = QtWidgets.QComboBox()
self.syn_checkbox = QtWidgets.QCheckBox('synthetics')
self.comp_checkbox = QtWidgets.QCheckBox('Load comparison data')
self.addQCboxItem('processed', 'green')
self.addQCboxItem('raw', 'black')
# self.perm_qcbox_right.setAlignment(2)
@ -836,9 +836,11 @@ class WaveformWidgetPG(QtWidgets.QWidget):
def getPlotDict(self):
return self.plotdict
def activateObspyDMToptions(self, activate):
self.syn_checkbox.setVisible(activate)
self.qcombo_processed.setVisible(activate)
def activateObspyDMToptions(self, activate: bool) -> None:
self.qcombo_processed.setEnabled(activate)
def activateCompareOptions(self, activate: bool) -> None:
self.comp_checkbox.setEnabled(activate)
def setPermText(self, number, text=None, color='black'):
if not 0 <= number < len(self.perm_labels):
@ -961,7 +963,7 @@ class WaveformWidgetPG(QtWidgets.QWidget):
[time for index, time in enumerate(time_ax_syn) if not index % nth_sample] if st_syn else [])
trace.data = np.array(
[datum * gain + n for index, datum in enumerate(trace.data) if not index % nth_sample])
trace_syn.data = np.array([datum + n for index, datum in enumerate(trace_syn.data)
trace_syn.data = np.array([datum + n + shift_syn for index, datum in enumerate(trace_syn.data)
if not index % nth_sample] if st_syn else [])
plots.append((times, trace.data,
times_syn, trace_syn.data))
@ -1150,12 +1152,12 @@ class PylotCanvas(FigureCanvas):
ax.set_xlim(self.cur_xlim)
ax.set_ylim(self.cur_ylim)
self.refreshPickDlgText()
ax.figure.canvas.draw()
ax.figure.canvas.draw_idle()
def panRelease(self, gui_event):
self.press = None
self.press_rel = None
self.figure.canvas.draw()
self.figure.canvas.draw_idle()
def panZoom(self, gui_event, threshold=2., factor=1.1):
if not gui_event.x and not gui_event.y:
@ -1373,11 +1375,15 @@ class PylotCanvas(FigureCanvas):
plot_positions[channel] = plot_pos
return plot_positions
def plotWFData(self, wfdata, title=None, zoomx=None, zoomy=None,
def plotWFData(self, wfdata, wfdata_compare=None, title=None, zoomx=None, zoomy=None,
noiselevel=None, scaleddata=False, mapping=True,
component='*', nth_sample=1, iniPick=None, verbosity=0,
plot_additional=False, additional_channel=None, scaleToChannel=None,
snr=None):
def get_wf_dict(data: Stream = Stream(), linecolor = 'k', offset: float = 0., **plot_kwargs):
return dict(data=data, linecolor=linecolor, offset=offset, plot_kwargs=plot_kwargs)
ax = self.axes[0]
ax.cla()
@ -1388,21 +1394,33 @@ class PylotCanvas(FigureCanvas):
settings = QSettings()
compclass = SetChannelComponents.from_qsettings(settings)
linecolor = (0., 0., 0., 1.) if not self.style else self.style['linecolor']['rgba_mpl']
plot_streams = dict(wfdata=get_wf_dict(linecolor=linecolor, linewidth=0.7),
wfdata_comp=get_wf_dict(offset=0.1, linecolor='b', alpha=0.7, linewidth=0.5))
if not component == '*':
alter_comp = compclass.getCompPosition(component)
# alter_comp = str(alter_comp[0])
st_select = wfdata.select(component=component)
st_select += wfdata.select(component=alter_comp)
plot_streams['wfdata']['data'] = wfdata.select(component=component)
plot_streams['wfdata']['data'] += wfdata.select(component=alter_comp)
if wfdata_compare:
plot_streams['wfdata_comp']['data'] = wfdata_compare.select(component=component)
plot_streams['wfdata_comp']['data'] += wfdata_compare.select(component=alter_comp)
else:
st_select = wfdata
plot_streams['wfdata']['data'] = wfdata
if wfdata_compare:
plot_streams['wfdata_comp']['data'] = wfdata_compare
st_main = plot_streams['wfdata']['data']
if mapping:
plot_positions = self.calcPlotPositions(st_select, compclass)
plot_positions = self.calcPlotPositions(st_main, compclass)
# list containing tuples of network, station, channel and plot position (for sorting)
nslc = []
for plot_pos, trace in enumerate(st_select):
for plot_pos, trace in enumerate(st_main):
if not trace.stats.channel[-1] in ['Z', 'N', 'E', '1', '2', '3']:
print('Warning: Unrecognized channel {}'.format(trace.stats.channel))
continue
@ -1410,44 +1428,48 @@ class PylotCanvas(FigureCanvas):
nslc.sort()
nslc.reverse()
linecolor = (0., 0., 0., 1.) if not self.style else self.style['linecolor']['rgba_mpl']
for n, seed_id in enumerate(nslc):
network, station, location, channel = seed_id.split('.')
st = st_select.select(id=seed_id)
trace = st[0].copy()
if mapping:
n = plot_positions[trace.stats.channel]
if n > nmax:
nmax = n
if verbosity:
msg = 'plotting %s channel of station %s' % (channel, station)
print(msg)
stime = trace.stats.starttime - wfstart
time_ax = prep_time_axis(stime, trace)
if time_ax is not None:
if scaleToChannel:
st_scale = wfdata.select(channel=scaleToChannel)
if st_scale:
tr = st_scale[0]
for wf_name, wf_dict in plot_streams.items():
st_select = wf_dict.get('data')
if not st_select:
continue
st = st_select.select(id=seed_id)
trace = st[0].copy()
if mapping:
n = plot_positions[trace.stats.channel]
if n > nmax:
nmax = n
if verbosity:
msg = 'plotting %s channel of station %s' % (channel, station)
print(msg)
stime = trace.stats.starttime - wfstart
time_ax = prep_time_axis(stime, trace)
if time_ax is not None:
if scaleToChannel:
st_scale = wfdata.select(channel=scaleToChannel)
if st_scale:
tr = st_scale[0]
trace.detrend('constant')
trace.normalize(np.max(np.abs(tr.data)) * 2)
scaleddata = True
if not scaleddata:
trace.detrend('constant')
trace.normalize(np.max(np.abs(tr.data)) * 2)
scaleddata = True
if not scaleddata:
trace.detrend('constant')
trace.normalize(np.max(np.abs(trace.data)) * 2)
trace.normalize(np.max(np.abs(trace.data)) * 2)
times = [time for index, time in enumerate(time_ax) if not index % nth_sample]
data = [datum + n for index, datum in enumerate(trace.data) if not index % nth_sample]
ax.axhline(n, color="0.5", lw=0.5)
ax.plot(times, data, color=linecolor, linewidth=0.7)
if noiselevel is not None:
for level in [-noiselevel[channel], noiselevel[channel]]:
ax.plot([time_ax[0], time_ax[-1]],
[n + level, n + level],
color=linecolor,
linestyle='dashed')
self.setPlotDict(n, seed_id)
offset = wf_dict.get('offset')
times = [time for index, time in enumerate(time_ax) if not index % nth_sample]
data = [datum + n + offset for index, datum in enumerate(trace.data) if not index % nth_sample]
ax.axhline(n, color="0.5", lw=0.5)
ax.plot(times, data, color=wf_dict.get('linecolor'), **wf_dict.get('plot_kwargs'))
if noiselevel is not None:
for level in [-noiselevel[channel], noiselevel[channel]]:
ax.plot([time_ax[0], time_ax[-1]],
[n + level, n + level],
color=wf_dict.get('linecolor'),
linestyle='dashed')
self.setPlotDict(n, seed_id)
if plot_additional and additional_channel:
compare_stream = wfdata.select(channel=additional_channel)
if compare_stream:
@ -1846,8 +1868,8 @@ class PhaseDefaults(QtWidgets.QDialog):
class PickDlg(QDialog):
update_picks = QtCore.Signal(dict)
def __init__(self, parent=None, data=None, station=None, network=None, location=None, picks=None,
autopicks=None, rotate=False, parameter=None, embedded=False, metadata=None,
def __init__(self, parent=None, data=None, data_compare=None, station=None, network=None, location=None, picks=None,
autopicks=None, rotate=False, parameter=None, embedded=False, metadata=None, show_comp_data=False,
event=None, filteroptions=None, model=None, wftype=None):
super(PickDlg, self).__init__(parent, Qt.Window)
self.orig_parent = parent
@ -1856,6 +1878,7 @@ class PickDlg(QDialog):
# initialize attributes
self.parameter = parameter
self._embedded = embedded
self.showCompData = show_comp_data
self.station = station
self.network = network
self.location = location
@ -1894,22 +1917,6 @@ class PickDlg(QDialog):
else:
self.filteroptions = FILTERDEFAULTS
self.pick_block = False
self.nextStation = QtWidgets.QCheckBox('Continue with next station ')
# comparison channel
self.compareChannel = QtWidgets.QComboBox()
self.compareChannel.activated.connect(self.resetPlot)
# scale channel
self.scaleChannel = QtWidgets.QComboBox()
self.scaleChannel.activated.connect(self.resetPlot)
# initialize panning attributes
self.press = None
self.xpress = None
self.ypress = None
self.cur_xlim = None
self.cur_ylim = None
# set attribute holding data
if data is None or not data:
@ -1922,6 +1929,31 @@ class PickDlg(QDialog):
raise Exception(errmsg)
else:
self.data = data
self.data_compare = data_compare
self.nextStation = QtWidgets.QCheckBox('Continue with next station ')
# comparison channel
self.referenceChannel = QtWidgets.QComboBox()
self.referenceChannel.activated.connect(self.resetPlot)
# comparison channel
self.compareCB = QtWidgets.QCheckBox()
self.compareCB.setChecked(self.showCompData)
self.compareCB.clicked.connect(self.switchCompData)
self.compareCB.clicked.connect(self.resetPlot)
self.compareCB.setVisible(bool(self.data_compare))
# scale channel
self.scaleChannel = QtWidgets.QComboBox()
self.scaleChannel.activated.connect(self.resetPlot)
# initialize panning attributes
self.press = None
self.xpress = None
self.ypress = None
self.cur_xlim = None
self.cur_ylim = None
self.stime, self.etime = full_range(self.getWFData())
@ -1934,12 +1966,12 @@ class PickDlg(QDialog):
self.setupUi()
# fill compare and scale channels
self.compareChannel.addItem('-', None)
self.referenceChannel.addItem('-', None)
self.scaleChannel.addItem('individual', None)
for trace in self.getWFData():
channel = trace.stats.channel
self.compareChannel.addItem(channel, trace)
self.referenceChannel.addItem(channel, trace)
if not channel[-1] in ['Z', 'N', 'E', '1', '2', '3']:
print('Skipping unknown channel for scaling: {}'.format(channel))
continue
@ -1956,7 +1988,7 @@ class PickDlg(QDialog):
if self.wftype is not None:
title += ' | ({})'.format(self.wftype)
self.multicompfig.plotWFData(wfdata=self.getWFData(),
self.multicompfig.plotWFData(wfdata=self.getWFData(), wfdata_compare=self.getWFDataComp(),
title=title)
self.multicompfig.setZoomBorders2content()
@ -2132,8 +2164,11 @@ class PickDlg(QDialog):
_dialtoolbar.addWidget(est_label)
_dialtoolbar.addWidget(self.plot_arrivals_button)
_dialtoolbar.addSeparator()
_dialtoolbar.addWidget(QtWidgets.QLabel('Compare to channel: '))
_dialtoolbar.addWidget(self.compareChannel)
_dialtoolbar.addWidget(QtWidgets.QLabel('Plot reference channel: '))
_dialtoolbar.addWidget(self.referenceChannel)
_dialtoolbar.addSeparator()
_dialtoolbar.addWidget(QtWidgets.QLabel('Compare: '))
_dialtoolbar.addWidget(self.compareCB)
_dialtoolbar.addSeparator()
_dialtoolbar.addWidget(QtWidgets.QLabel('Scaling: '))
_dialtoolbar.addWidget(self.scaleChannel)
@ -2470,7 +2505,7 @@ class PickDlg(QDialog):
def activatePicking(self):
self.leave_rename_phase()
self.renamePhaseAction.setEnabled(False)
self.compareChannel.setEnabled(False)
self.referenceChannel.setEnabled(False)
self.scaleChannel.setEnabled(False)
phase = self.currentPhase
phaseID = self.getPhaseID(phase)
@ -2502,7 +2537,7 @@ class PickDlg(QDialog):
self.disconnectPressEvent()
self.multicompfig.connectEvents()
self.renamePhaseAction.setEnabled(True)
self.compareChannel.setEnabled(True)
self.referenceChannel.setEnabled(True)
self.scaleChannel.setEnabled(True)
self.connect_pick_delete()
self.draw()
@ -2575,6 +2610,12 @@ class PickDlg(QDialog):
def getWFData(self):
return self.data
def getWFDataComp(self):
if self.showCompData:
return self.data_compare
else:
return Stream()
def selectWFData(self, channel):
component = channel[-1].upper()
wfdata = Stream()
@ -2696,11 +2737,16 @@ class PickDlg(QDialog):
stime = self.getStartTime()
# copy data for plotting
data = self.getWFData().copy()
data = self.getPickPhases(data, phase)
data.normalize()
if not data:
# copy wfdata for plotting
wfdata = self.getWFData().copy()
wfdata_comp = self.getWFDataComp().copy()
wfdata = self.getPickPhases(wfdata, phase)
wfdata_comp = self.getPickPhases(wfdata_comp, phase)
for wfd in [wfdata, wfdata_comp]:
if wfd:
wfd.normalize()
if not wfdata:
QtWidgets.QMessageBox.warning(self, 'No channel to plot',
'No channel to plot for phase: {}. '
'Make sure to select the correct channels for P and S '
@ -2708,14 +2754,16 @@ class PickDlg(QDialog):
self.leave_picking_mode()
return
# filter data and trace on which is picked prior to determination of SNR
# filter wfdata and trace on which is picked prior to determination of SNR
filterphase = self.currentFilterPhase()
if filterphase:
filteroptions = self.getFilterOptions(filterphase).parseFilterOptions()
try:
data.detrend('linear')
data.filter(**filteroptions)
# wfdata.filter(**filteroptions)# MP MP removed filtering of original data
for wfd in [wfdata, wfdata_comp]:
if wfd:
wfd.detrend('linear')
wfd.filter(**filteroptions)
# wfdata.filter(**filteroptions)# MP MP removed filtering of original wfdata
except ValueError as e:
self.qmb = QtWidgets.QMessageBox(QtWidgets.QMessageBox.Icon.Information,
'Denied',
@ -2725,8 +2773,8 @@ class PickDlg(QDialog):
snr = []
noiselevels = {}
# determine SNR and noiselevel
for trace in data.traces:
st = data.select(channel=trace.stats.channel)
for trace in wfdata.traces:
st = wfdata.select(channel=trace.stats.channel)
stime_diff = trace.stats.starttime - stime
result = getSNR(st, (noise_win, gap_win, signal_win), ini_pick - stime_diff)
snr.append(result[0])
@ -2737,23 +2785,25 @@ class PickDlg(QDialog):
noiselevel = nfac
noiselevels[trace.stats.channel] = noiselevel
# prepare plotting of data
for trace in data:
t = prep_time_axis(trace.stats.starttime - stime, trace)
inoise = getnoisewin(t, ini_pick, noise_win, gap_win)
trace = demeanTrace(trace, inoise)
# upscale trace data in a way that each trace is vertically zoomed to noiselevel*factor
channel = trace.stats.channel
noiselevel = noiselevels[channel]
noiseScaleFactor = self.calcNoiseScaleFactor(noiselevel, zoomfactor=5.)
trace.data *= noiseScaleFactor
noiselevels[channel] *= noiseScaleFactor
# prepare plotting of wfdata
for wfd in [wfdata, wfdata_comp]:
if wfd:
for trace in wfd:
t = prep_time_axis(trace.stats.starttime - stime, trace)
inoise = getnoisewin(t, ini_pick, noise_win, gap_win)
trace = demeanTrace(trace, inoise)
# upscale trace wfdata in a way that each trace is vertically zoomed to noiselevel*factor
channel = trace.stats.channel
noiselevel = noiselevels[channel]
noiseScaleFactor = self.calcNoiseScaleFactor(noiselevel, zoomfactor=5.)
trace.data *= noiseScaleFactor
noiselevels[channel] *= noiseScaleFactor
mean_snr = np.mean(snr)
x_res = getResolutionWindow(mean_snr, parameter.get('extent'))
xlims = [ini_pick - x_res, ini_pick + x_res]
ylims = list(np.array([-.5, .5]) + [0, len(data) - 1])
ylims = list(np.array([-.5, .5]) + [0, len(wfdata) - 1])
title = self.getStation() + ' picking mode'
title += ' | SNR: {}'.format(mean_snr)
@ -2761,9 +2811,10 @@ class PickDlg(QDialog):
filtops_str = transformFilteroptions2String(filteroptions)
title += ' | Filteroptions: {}'.format(filtops_str)
plot_additional = bool(self.compareChannel.currentText())
additional_channel = self.compareChannel.currentText()
self.multicompfig.plotWFData(wfdata=data,
plot_additional = bool(self.referenceChannel.currentText())
additional_channel = self.referenceChannel.currentText()
self.multicompfig.plotWFData(wfdata=wfdata,
wfdata_compare=wfdata_comp,
title=title,
zoomx=xlims,
zoomy=ylims,
@ -3154,7 +3205,8 @@ class PickDlg(QDialog):
self.cur_xlim = self.multicompfig.axes[0].get_xlim()
self.cur_ylim = self.multicompfig.axes[0].get_ylim()
# self.multicompfig.updateCurrentLimits()
data = self.getWFData().copy()
wfdata = self.getWFData().copy()
wfdata_comp = self.getWFDataComp().copy()
title = self.getStation()
if filter:
filtoptions = None
@ -3162,19 +3214,22 @@ class PickDlg(QDialog):
filtoptions = self.getFilterOptions(self.getPhaseID(phase), gui_filter=True).parseFilterOptions()
if filtoptions is not None:
data.detrend('linear')
data.taper(0.02, type='cosine')
data.filter(**filtoptions)
for wfd in [wfdata, wfdata_comp]:
if wfd:
wfd.detrend('linear')
wfd.taper(0.02, type='cosine')
wfd.filter(**filtoptions)
filtops_str = transformFilteroptions2String(filtoptions)
title += ' | Filteroptions: {}'.format(filtops_str)
if self.wftype is not None:
title += ' | ({})'.format(self.wftype)
plot_additional = bool(self.compareChannel.currentText())
additional_channel = self.compareChannel.currentText()
plot_additional = bool(self.referenceChannel.currentText())
additional_channel = self.referenceChannel.currentText()
scale_channel = self.scaleChannel.currentText()
self.multicompfig.plotWFData(wfdata=data, title=title,
self.multicompfig.plotWFData(wfdata=wfdata, wfdata_compare=wfdata_comp,
title=title,
zoomx=self.getXLims(),
zoomy=self.getYLims(),
plot_additional=plot_additional,
@ -3247,6 +3302,9 @@ class PickDlg(QDialog):
self.resetZoom()
self.refreshPlot()
def switchCompData(self):
self.showCompData = self.compareCB.isChecked()
def refreshPlot(self):
if self.autoFilterAction.isChecked():
self.filterActionP.setChecked(False)
@ -3858,11 +3916,13 @@ class TuneAutopicker(QWidget):
location = None
wfdata = self.data.getWFData()
wfdata_comp = self.data.getWFDataComp()
metadata = self.parent().metadata
event = self.get_current_event()
filteroptions = self.parent().filteroptions
wftype = self.wftype if self.obspy_dmt else ''
self.pickDlg = PickDlg(self.parent(), data=wfdata.select(station=station).copy(),
data_comp=wfdata_comp.select(station=station).copy(),
station=station, network=network,
location=location, parameter=self.parameter,
picks=self.get_current_event_picks(station),
@ -3947,7 +4007,7 @@ class TuneAutopicker(QWidget):
self.plot_manual_pick_to_ax(ax=ax, picks=picks, phase='S',
starttime=starttime, quality=qualitySpick)
for canvas in self.parent().canvas_dict.values():
canvas.draw()
canvas.draw_idle()
def plot_manual_pick_to_ax(self, ax, picks, phase, starttime, quality):
mpp = picks[phase]['mpp'] - starttime