[double-checked] code has been double checked before running on data

pylot/core/util/dataprocessing.py

@@ -7,52 +7,56 @@ from obspy import UTCDateTime
 import sys
 
 def time_from_header(header):
-    '''
+    """
     Function takes in the second line from a .gse file and takes out the date and time from that line.
     :param header: second line from .gse file
     :type header: string
     :return: a list of integers of form [year, month, day, hour, minute, second, microsecond]
-    '''
+    """
     timeline = header.split(' ')
     time = timeline[1].split('/') + timeline[2].split(':')
     time = time[:-1] + time[-1].split('.')
     return [int(t) for t in time]
 
+
 def check_time(datetime):
-    '''
+    """
     Function takes in date and time as list and validates it's values by trying to make an UTCDateTime object from it
     :param datetime: list of integers [year, month, day, hour, minute, second, microsecond]
     :type datetime: list
     :return: returns True if Values are in supposed range, returns False otherwise
-    '''
+    """
     try:
         UTCDateTime(*datetime)
         return True
     except ValueError:
         return False
 
+
 def get_file_list(root_dir):
-    '''
+    """
     Function uses a directorie to get all the *.gse files from it.
     :param root_dir: a directorie leading to the .gse files
     :type root_dir: string
     :return: returns a list of filenames (without path to them)
-    '''
+    """
     file_list = glob.glob1(root_dir, '*.gse')
     return file_list
 
-def checks_station_second(datetime):
+
-    '''
+def checks_station_second(datetime, file):
+    """
     Function uses the given list to check if the parameter 'second' is set to 60 by mistake
      and sets the time correctly if so. Can only correct time if no date change would be necessary.
     :param datetime: [year, month, day, hour, minute, second, microsecond]
     :return: returns the input with the correct value for second
-    '''
+    """
     if datetime[5] == 60:
         if datetime[4] == 59:
             if datetime[3] == 23:
-                print 'Date should be next day.'+file
+                err_msg = 'Date should be next day. ' \
-                raise ValueError
+                          'File not changed: {0}'.format(file)
+                raise ValueError(err_msg)
             else:
                 datetime[3] += 1
                 datetime[4] = 0
@@ -62,57 +66,60 @@ def checks_station_second(datetime):
             datetime[5] = 0
     return datetime
 
+
 def make_time_line(line, datetime):
-    '''
+    """
-    Function takes in the original line from a .gse file and a list of date and time values to make a new line with
+    Function takes in the original line from a .gse file and a list of date and
-    corrected date and time.
+    time values to make a new line with corrected date and time.
     :param line: second line from .gse file.
     :type line: string
     :param datetime: list of integers [year, month, day, hour, minute, second, microsecond]
     :type datetime: list
     :return: returns a string to write it into a file.
-    '''
+    """
-    insertion = '{:02d}'.format(int(datetime[3])) + ':' + '{:02d}'.format(int(datetime[4])) + ':' + '{:02d}'.format(int(datetime[5])) + '.000'
+    insertion = '{hour:02d}:{min:02d}:{sec:02d}.{mic:03d}'
+    insertion.format(hour=int(datetime[3]),
+                     min=int(datetime[4]),
+                     sec=int(datetime[5]),
+                     mic=int(datetime[6]) * 1e-3)
     newline = line[:16] + insertion + line[28:]
     return newline
 
+
 def evt_head_check(root_dir, out_dir = None):
-    '''
+    """
     A function to make sure that an arbitrary number of .gse files have correct values in their header.
     :param root_dir: a directory leading to the .gse files.
     :type root_dir: string
     :param out_dir: a directory to store the new files somwhere els.
     :return: returns nothing
-    '''
+    """
     if not out_dir:
-        print 'WARNING files are going to be overwritten!'
+        print('WARNING files are going to be overwritten!')
-        inp = str(raw_input('Continue? [y/n]'))
+        inp = str(raw_input('Continue? [y/N]'))
-        if inp == 'y':
+        if not inp == 'y':
-            pass
-        else:
             sys.exit()
-    Filelist = get_file_list(root_dir)
+    filelist = get_file_list(root_dir)
-    debugcounter = 0
+    nfiles = 0
-    for i in range(len(Filelist)):
+    for file in filelist:
-        inFile = open(root_dir+'/'+Filelist[i], 'r')
+        infile = open(os.path.join(root_dir, file), 'r')
-        lines = inFile.readlines()
+        lines = infile.readlines()
+        infile.close()
         datetime = time_from_header(lines[1])
         if check_time(datetime):
             continue
         else:
-            debugcounter += 1
+            nfiles += 1
-            datetime = checks_station_second(datetime)
+            datetime = checks_station_second(datetime, file)
-            print 'writing ' + Filelist[i]
+            print('writing ' + file)
-            timeline = make_time_line(lines[1],datetime)
             # write File
-            lines[1] = timeline
+            lines[1] = make_time_line(lines[1], datetime)
             if not out_dir:
-                out = open(root_dir+Filelist[i], 'w')
+                out = open(os.path.join(root_dir, file), 'w')
                 out.writelines(lines)
                 out.close()
             else:
-                out = open(out_dir+Filelist[i], 'w')
+                out = open(os.path.join(out_dir, file), 'w')
                 out.writelines(lines)
                 out.close()
-        inFile.close()
+    print(nfiles)
-    print debugcounter