[major] getting rid of unused/unnecessary "rootpath" and "database" structure. Testing required.
This commit is contained in:
parent
3f97097bf6
commit
7a13288c85
79
PyLoT.py
79
PyLoT.py
@ -83,7 +83,7 @@ from pylot.core.util.event import Event
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from pylot.core.io.location import create_creation_info, create_event
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from pylot.core.util.widgets import FilterOptionsDialog, NewEventDlg, \
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PylotCanvas, WaveformWidgetPG, PropertiesDlg, HelpForm, createAction, PickDlg, \
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ComparisonWidget, TuneAutopicker, PylotParaBox, AutoPickDlg, CanvasWidget, AutoPickWidget, \
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ComparisonWidget, TuneAutopicker, PylotParameterWidget, AutoPickDlg, CanvasWidget, AutoPickWidget, \
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CompareEventsWidget, ProgressBarWidget, AddMetadataWidget, SingleTextLineDialog, LogWidget, PickQualitiesFromXml, \
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SpectrogramTab, SearchFileByExtensionDialog
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from pylot.core.util.array_map import Array_map
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@ -136,7 +136,7 @@ class MainWindow(QMainWindow):
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self.project.parameter = self._inputs
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self.tap = None
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self.apw = None
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self.paraBox = None
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self.parameterWidget = None
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self.array_map = None
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self._metadata = Metadata(verbosity=0)
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self._eventChanged = [False, False]
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@ -188,7 +188,6 @@ class MainWindow(QMainWindow):
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self.table_headers = ['', 'Event', 'Time', 'Lat', 'Lon', 'Depth', 'Ml', 'Mw', '[N] MP', '[N] AP', 'Tuning Set',
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'Test Set', 'Notes']
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# TODO: refactor rootpath to datapath
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while True:
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try:
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if settings.value("user/FullName", None) is None:
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@ -1210,7 +1209,7 @@ class MainWindow(QMainWindow):
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with open(eventlist_file, 'r') as infile:
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eventlist_subset = [os.path.join(basepath, filename.split('\n')[0]) for filename in
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infile.readlines()]
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msg = 'Found file "eventlist.txt" in database path. WILL ONLY USE SELECTED EVENTS out of {} events ' \
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msg = 'Found file "eventlist.txt" in datapath. WILL ONLY USE SELECTED EVENTS out of {} events ' \
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'contained in this subset'
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print(msg.format(len(eventlist_subset)))
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eventlist = [eventname for eventname in eventlist if eventname in eventlist_subset]
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@ -1235,49 +1234,34 @@ class MainWindow(QMainWindow):
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# get path from first event in list and split them
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path = eventlist[0]
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try:
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system_name = platform.system()
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if system_name in ["Linux", "Darwin"]:
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datapath = os.path.split(path)[0]
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dirs = {
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'database': path.split('/')[-2],
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'datapath': os.path.split(path)[0], # path.split('/')[-3],
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'rootpath': '/' + os.path.join(*path.split('/')[:-3])
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}
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elif system_name == "Windows":
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rootpath = path.split('/')[:-3]
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rootpath[0] += '/'
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dirs = {
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# TODO: Arrange path to meet Win standards
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'database': path.split('/')[-2],
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'datapath': path.split('/')[-3],
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'rootpath': os.path.join(*rootpath)
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'datapath': datapath,
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}
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except Exception as e:
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dirs = {
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'database': '',
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'datapath': '',
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'rootpath': ''
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}
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print('Warning: Could not automatically init folder structure. ({})'.format(e))
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settings = QSettings()
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settings.setValue("data/dataRoot", dirs['datapath']) # d irs['rootpath'])
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settings.setValue("data/dataRoot", dirs['datapath'])
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settings.sync()
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if not self.project.eventlist:
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# init parameter object
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self.setParameter(show=False)
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# hide all parameter (show all needed parameter later)
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self.paraBox.hide_parameter()
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self.parameterWidget.hide_parameter()
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for directory in dirs.keys():
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# set parameter
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box = self.paraBox.boxes[directory]
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self.paraBox.setValue(box, dirs[directory])
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box = self.parameterWidget.boxes[directory]
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self.parameterWidget.setValue(box, dirs[directory])
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# show needed parameter in box
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self.paraBox.show_parameter(directory)
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dirs_box = self.paraBox.get_groupbox_dialog('Directories')
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self.parameterWidget.show_parameter(directory)
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dirs_box = self.parameterWidget.get_groupbox_dialog('Directories')
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if not dirs_box.exec_():
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return
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self.project.rootpath = dirs['rootpath']
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self.project.datapath = dirs['datapath']
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else:
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if hasattr(self.project, 'datapath'):
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@ -1286,7 +1270,6 @@ class MainWindow(QMainWindow):
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'Datapath missmatch to current project!')
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return
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else:
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self.project.rootpath = dirs['rootpath']
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self.project.datapath = dirs['datapath']
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self.project.add_eventlist(eventlist)
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@ -1374,11 +1357,10 @@ class MainWindow(QMainWindow):
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return True
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def modify_project_path(self, new_rootpath):
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# TODO: change root to datapath
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self.project.rootpath = new_rootpath
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self.project.datapath = new_rootpath
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for event in self.project.eventlist:
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event.rootpath = new_rootpath
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event.path = os.path.join(event.rootpath, event.datapath, event.database, event.pylot_id)
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event.datapath = new_rootpath
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event.path = os.path.join(event.datapath, event.pylot_id)
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event.path = event.path.replace('\\', '/')
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event.path = event.path.replace('//', '/')
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@ -1572,7 +1554,7 @@ class MainWindow(QMainWindow):
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self.set_fname(self.get_data().getEventFileName(), type)
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return self.get_fnames(type)
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def saveData(self, event=None, directory=None, outformats=['.xml', '.cnv', '.obs', '_focmec.in', '.pha']):
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def saveData(self, event=None, directory=None, outformats=None):
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'''
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Save event data to directory with specified output formats.
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:param event: PyLoT Event, if not set current event will be used
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@ -1580,6 +1562,8 @@ class MainWindow(QMainWindow):
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:param outformats: str/list of output formats
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:return:
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'''
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if outformats is None:
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outformats = ['.xml', '.cnv', '.obs', '_focmec.in', '.pha']
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if not event:
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event = self.get_current_event()
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if not type(outformats) == list:
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@ -1715,7 +1699,7 @@ class MainWindow(QMainWindow):
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# WIP JG
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def eventlistXml(self):
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path = self._inputs['rootpath'] + '/' + self._inputs['datapath'] + '/' + self._inputs['database']
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path = self._inputs['datapath']
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outpath = self.project.location[:self.project.location.rfind('/')]
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geteventlistfromxml(path, outpath)
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return
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@ -2441,7 +2425,7 @@ class MainWindow(QMainWindow):
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filterS = filteroptions['S']
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minP, maxP = filterP.getFreq()
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minS, maxS = filterS.getFreq()
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self.paraBox.params_to_gui()
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self.parameterWidget.params_to_gui()
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def getFilterOptions(self):
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return self.filteroptions
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@ -3190,8 +3174,8 @@ class MainWindow(QMainWindow):
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ttt = parameter['ttpatter']
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outfile = parameter['outpatter']
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eventname = self.get_current_event_name()
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obsdir = os.path.join(self._inputs['rootpath'], self._inputs['datapath'], self._inputs['database'], eventname)
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self.saveData(event=self.get_current_event(), directory=obsdir, outformats='.obs')
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obsdir = os.path.join(self._inputs['datapath'], eventname)
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self.saveData(event=self.get_current_event(), directory=obsdir, outformats=['.obs'])
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filename = 'PyLoT_' + eventname
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locpath = os.path.join(locroot, 'loc', filename)
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phasefile = os.path.join(obsdir, filename + '.obs')
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@ -3748,6 +3732,7 @@ class MainWindow(QMainWindow):
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if self.project.parameter:
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# do this step to update default parameter on older PyLoT projects
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self.project.parameter.reinit_default_parameters()
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PylotParameter.check_deprecated_parameters(self.project.parameter)
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self._inputs = self.project.parameter
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self.updateFilteroptions()
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@ -3865,13 +3850,13 @@ class MainWindow(QMainWindow):
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def setParameter(self, checked=0, show=True):
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if checked: pass # dummy argument to receive trigger signal (checked) if called by QAction
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if not self.paraBox:
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self.paraBox = PylotParaBox(self._inputs, parent=self, windowflag=Qt.Window)
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self.paraBox.accepted.connect(self._setDirty)
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self.paraBox.accepted.connect(self.filterOptionsFromParameter)
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if not self.parameterWidget:
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self.parameterWidget = PylotParameterWidget(self._inputs, parent=self, windowflag=Qt.Window)
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self.parameterWidget.accepted.connect(self._setDirty)
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self.parameterWidget.accepted.connect(self.filterOptionsFromParameter)
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if show:
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self.paraBox.params_to_gui()
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self.paraBox.show()
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self.parameterWidget.params_to_gui()
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self.parameterWidget.show()
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def deleteAllAutopicks(self):
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qmb = QMessageBox(self, icon=QMessageBox.Question,
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@ -3918,16 +3903,18 @@ class Project(object):
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Pickable class containing information of a PyLoT project, like event lists and file locations.
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'''
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# TODO: remove rootpath
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def __init__(self):
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self.eventlist = []
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self.location = None
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self.rootpath = None
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self.datapath = None
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self.dirty = False
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self.parameter = None
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self._table = None
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@property
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def rootpath(self):
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return self.datapath
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def add_eventlist(self, eventlist):
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'''
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Add events from an eventlist containing paths to event directories.
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@ -3937,8 +3924,6 @@ class Project(object):
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return
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for item in eventlist:
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event = Event(item)
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event.rootpath = self.parameter['rootpath']
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event.database = self.parameter['database']
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event.datapath = self.parameter['datapath']
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if not event.path in self.getPaths():
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self.eventlist.append(event)
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10
autoPyLoT.py
10
autoPyLoT.py
@ -136,11 +136,9 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, even
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if parameter.hasParam('datastructure'):
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# getting information on data structure
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datastructure = DATASTRUCTURE[parameter.get('datastructure')]()
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dsfields = {'root': parameter.get('rootpath'),
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'dpath': parameter.get('datapath'),
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'dbase': parameter.get('database')}
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dsfields = {'dpath': parameter.get('datapath'),}
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exf = ['root', 'dpath', 'dbase']
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exf = ['dpath']
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if parameter['eventID'] != '*' and fnames == 'None':
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dsfields['eventID'] = parameter['eventID']
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@ -206,12 +204,10 @@ def autoPyLoT(input_dict=None, parameter=None, inputfile=None, fnames=None, even
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locflag = 2
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else:
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# started in tune or interactive mode
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datapath = os.path.join(parameter['rootpath'],
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parameter['datapath'])
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datapath = parameter['datapath']
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events = []
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for eventID in eventid:
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events.append(os.path.join(datapath,
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parameter['database'],
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eventID))
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if not events:
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@ -203,8 +203,6 @@ The meaning of the header entries is:
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PyLoT GUI starts with an empty project. To add events, use the add event data button. Select one or multiple folders
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containing events.
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[//]: <> (TODO: explain _Directories: Root path, Data path, Database path_)
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### Saving projects
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Save the current project from the menu with File->Save project or File->Save project as. PyLoT uses ``.plp`` files to
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@ -4,10 +4,8 @@
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%Parameters are optimized for %extent data sets!
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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#main settings#
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#rootpath# %project path
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#datapath# %data path
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#database# %name of data base
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#eventID# %event ID for single event processing (* for all events found in database)
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#eventID# %event ID for single event processing (* for all events found in datapath)
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#invdir# %full path to inventory or dataless-seed file
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PILOT #datastructure# %choose data structure
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True #apverbose# %choose 'True' or 'False' for terminal output
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@ -4,10 +4,8 @@
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%Parameters are optimized for %extent data sets!
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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#main settings#
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/DATA/Insheim #rootpath# %project path
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EVENT_DATA/LOCAL #datapath# %data path
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2018.02_Insheim #database# %name of data base
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e0006.038.18 #eventID# %event ID for single event processing (* for all events found in database)
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/DATA/Insheim/EVENT_DATA/LOCAL/2018.02_Insheim #datapath# %data path
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e0006.038.18 #eventID# %event ID for single event processing (* for all events found in datapath)
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/DATA/Insheim/STAT_INFO #invdir# %full path to inventory or dataless-seed file
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PILOT #datastructure# %choose data structure
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True #apverbose# %choose 'True' or 'False' for terminal output
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@ -4,10 +4,8 @@
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%Parameters are optimized for %extent data sets!
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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#main settings#
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#rootpath# %project path
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#datapath# %data path
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#database# %name of data base
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#eventID# %event ID for single event processing (* for all events found in database)
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#eventID# %event ID for single event processing (* for all events found in datapath)
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#invdir# %full path to inventory or dataless-seed file
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PILOT #datastructure# %choose data structure
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True #apverbose# %choose 'True' or 'False' for terminal output
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@ -6,24 +6,14 @@ import numpy as np
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Default parameters used for picking
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"""
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defaults = {'rootpath': {'type': str,
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'tooltip': 'project path',
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'value': '',
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'namestring': 'Root path'},
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'datapath': {'type': str,
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'tooltip': 'data path',
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defaults = {'datapath': {'type': str,
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'tooltip': 'path to eventfolders',
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'value': '',
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'namestring': 'Data path'},
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'database': {'type': str,
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'tooltip': 'name of data base',
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'value': '',
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'namestring': 'Database path'},
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'eventID': {'type': str,
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'tooltip': 'event ID for single event processing (* for all events found in database)',
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'value': '',
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'tooltip': 'event ID for single event processing (* for all events found in datapath)',
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'value': '*',
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'namestring': 'Event ID'},
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'extent': {'type': str,
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@ -522,9 +512,7 @@ defaults = {'rootpath': {'type': str,
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settings_main = {
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'dirs': [
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'rootpath',
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'datapath',
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'database',
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'eventID',
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'invdir',
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'datastructure',
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@ -1,5 +1,7 @@
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#!/usr/bin/env python
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# -*- coding: utf-8 -*-
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import logging
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import os
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from pylot.core.io import default_parameters
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from pylot.core.util.errors import ParameterError
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@ -88,10 +90,10 @@ class PylotParameter(object):
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return bool(self.__parameter)
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def __getitem__(self, key):
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try:
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if key in self.__parameter:
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return self.__parameter[key]
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except:
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return None
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else:
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logging.warning(f'{key} not found in PylotParameter')
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def __setitem__(self, key, value):
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try:
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@ -418,6 +420,28 @@ class PylotParameter(object):
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line = value + name + ttip
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fid.write(line)
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@staticmethod
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def check_deprecated_parameters(parameters):
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if parameters.hasParam('database') and parameters.hasParam('rootpath'):
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parameters['datapath'] = os.path.join(parameters['rootpath'], parameters['datapath'],
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parameters['database'])
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logging.warning(
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f'Parameters database and rootpath are deprecated. '
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f'Tried to merge them to now path: {parameters["datapath"]}.'
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)
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remove_keys = []
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for key in parameters:
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if not key in default_parameters.defaults.keys():
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remove_keys.append(key)
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logging.warning(f'Removing deprecated parameter: {key}')
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for key in remove_keys:
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del parameters[key]
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parameters._settings_main = default_parameters.settings_main
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parameters._settings_special_pick = default_parameters.settings_special_pick
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class FilterOptions(object):
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'''
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@ -512,7 +512,7 @@ def writephases(arrivals, fformat, filename, parameter=None, eventinfo=None):
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fid = open("%s" % filename, 'w')
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# write header
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fid.write('# EQEVENT: %s Label: EQ%s Loc: X 0.00 Y 0.00 Z 10.00 OT 0.00 \n' %
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(parameter.get('database'), parameter.get('eventID')))
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(parameter.get('datapath'), parameter.get('eventID')))
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arrivals = chooseArrivals(arrivals) # MP MP what is chooseArrivals? It is not defined anywhere
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for key in arrivals:
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# P onsets
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@ -665,7 +665,7 @@ def writephases(arrivals, fformat, filename, parameter=None, eventinfo=None):
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print("Writing phases to %s for HYPOSAT" % filename)
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fid = open("%s" % filename, 'w')
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# write header
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fid.write('%s, event %s \n' % (parameter.get('database'), parameter.get('eventID')))
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fid.write('%s, event %s \n' % (parameter.get('datapath'), parameter.get('eventID')))
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arrivals = chooseArrivals(arrivals) # MP MP what is chooseArrivals? It is not defined anywhere
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for key in arrivals:
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# P onsets
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@ -22,14 +22,11 @@ class Event(ObsPyEvent):
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:param path: path to event directory
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:type path: str
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"""
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# TODO: remove rootpath and database
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self.pylot_id = path.split('/')[-1]
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# initialize super class
|
||||
super(Event, self).__init__(resource_id=ResourceIdentifier('smi:local/' + self.pylot_id))
|
||||
self.path = path
|
||||
self.database = path.split('/')[-2]
|
||||
self.datapath = os.path.split(path)[0] # path.split('/')[-3]
|
||||
self.rootpath = '/' + os.path.join(*path.split('/')[:-3])
|
||||
self.pylot_autopicks = {}
|
||||
self.pylot_picks = {}
|
||||
self.notes = ''
|
||||
|
||||
@ -8,6 +8,7 @@ import copy
|
||||
import datetime
|
||||
import getpass
|
||||
import glob
|
||||
import logging
|
||||
import multiprocessing
|
||||
import os
|
||||
import subprocess
|
||||
@ -3835,7 +3836,7 @@ class TuneAutopicker(QWidget):
|
||||
self.stb_names = ['aicARHfig', 'refSpick', 'el_S1pick', 'el_S2pick']
|
||||
|
||||
def add_parameters(self):
|
||||
self.paraBox = PylotParaBox(self.parameter, parent=self, windowflag=Qt.Widget)
|
||||
self.paraBox = PylotParameterWidget(self.parameter, parent=self, windowflag=Qt.Widget)
|
||||
self.paraBox.set_tune_mode(True)
|
||||
self.update_eventID()
|
||||
self.parameter_layout.addWidget(self.paraBox)
|
||||
@ -4202,7 +4203,7 @@ class TuneAutopicker(QWidget):
|
||||
self.qmb.show()
|
||||
|
||||
|
||||
class PylotParaBox(QtWidgets.QWidget):
|
||||
class PylotParameterWidget(QtWidgets.QWidget):
|
||||
accepted = QtCore.Signal(str)
|
||||
rejected = QtCore.Signal(str)
|
||||
|
||||
@ -4316,6 +4317,11 @@ class PylotParaBox(QtWidgets.QWidget):
|
||||
grid = QtWidgets.QGridLayout()
|
||||
|
||||
for index1, name in enumerate(parameter_names):
|
||||
if name in ['rootpath', 'database']:
|
||||
logging.warning(
|
||||
f'Deprecated parameter loaded: {name}. Check if datapath is still correct in parameter widget.'
|
||||
)
|
||||
continue
|
||||
default_item = self.parameter.get_defaults()[name]
|
||||
tooltip = default_item['tooltip']
|
||||
tooltip += ' | type: {}'.format(default_item['type'])
|
||||
@ -4885,7 +4891,7 @@ class PropTab(QWidget):
|
||||
def getValues(self):
|
||||
return None
|
||||
|
||||
def resetValues(self, infile=None):
|
||||
def resetValues(self, infile):
|
||||
return None
|
||||
|
||||
|
||||
@ -4982,12 +4988,7 @@ class InputsTab(PropTab):
|
||||
else:
|
||||
index = 2
|
||||
datapath = para.get('datapath') if not para.get('datapath') is None else ''
|
||||
rootpath = para.get('rootpath') if not para.get('rootpath') is None else ''
|
||||
database = para.get('database') if not para.get('database') is None else ''
|
||||
if isinstance(database, int):
|
||||
database = str(database)
|
||||
path = os.path.join(os.path.expanduser('~'), rootpath, datapath, database)
|
||||
values = {"data/dataRoot": self.dataDirEdit.setText("%s" % path),
|
||||
values = {"data/dataRoot": self.dataDirEdit.setText("%s" % datapath),
|
||||
"user/FullName": self.fullNameEdit.text(),
|
||||
"data/Structure": self.structureSelect.setCurrentIndex(index),
|
||||
"tstart": self.tstartBox.setValue(0),
|
||||
|
||||
@ -4,10 +4,8 @@
|
||||
%Parameters are optimized for %extent data sets!
|
||||
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||
#main settings#
|
||||
/home/darius #rootpath# %project path
|
||||
alparray #datapath# %data path
|
||||
waveforms_used #database# %name of data base
|
||||
e0093.173.16 #eventID# %event ID for single event processing (* for all events found in database)
|
||||
/home/darius/alparray/waveforms_used #datapath# %data path
|
||||
e0093.173.16 #eventID# %event ID for single event processing (* for all events found in datapath)
|
||||
/home/darius/alparray/metadata #invdir# %full path to inventory or dataless-seed file
|
||||
PILOT #datastructure# %choose data structure
|
||||
True #apverbose# %choose 'True' or 'False' for terminal output
|
||||
|
||||
@ -4,10 +4,8 @@
|
||||
%Parameters are optimized for %extent data sets!
|
||||
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||
#main settings#
|
||||
/home/darius #rootpath# %project path
|
||||
alparray #datapath# %data path
|
||||
waveforms_used #database# %name of data base
|
||||
e0093.173.16 #eventID# %event ID for single event processing (* for all events found in database)
|
||||
/home/darius/alparray/waveforms_used #datapath# %data path
|
||||
e0093.173.16 #eventID# %event ID for single event processing (* for all events found in datapath)
|
||||
/home/darius/alparray/metadata #invdir# %full path to inventory or dataless-seed file
|
||||
PILOT #datastructure# %choose data structure
|
||||
True #apverbose# %choose 'True' or 'False' for terminal output
|
||||
|
||||
Loading…
Reference in New Issue
Block a user