Merge branch 'develop' of ariadne.geophysik.ruhr-uni-bochum.de:/data/git/pylot into develop
This commit is contained in:
Marcel Paffrath
commit
82089a6490
17
QtPyLoT.py
17
QtPyLoT.py
@ -36,7 +36,7 @@ from PySide.QtGui import QMainWindow, QInputDialog, QIcon, QFileDialog, \
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QDialog, QErrorMessage, QApplication, QPixmap, QMessageBox, QSplashScreen, \
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QActionGroup, QListWidget, QDockWidget
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import numpy as np
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from obspy import UTCDateTime, readEvents
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from obspy import UTCDateTime
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from pylot.core.read.data import Data
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from pylot.core.read.inputs import FilterOptions, AutoPickParameter
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@ -59,7 +59,6 @@ locateTool = dict(nll=locateNll)
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class MainWindow(QMainWindow):
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__version__ = _getVersionString()
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__slots__ = ['loc']
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closing = Signal()
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def __init__(self, parent=None):
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@ -651,10 +650,10 @@ class MainWindow(QMainWindow):
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self.drawPicks(station)
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else:
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self.updateStatus('picks discarded ({0})'.format(station))
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if not self.locflag() and self.check4Loc():
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self.locflag(True)
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elif self.locflag() and not self.check4Loc():
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self.locflag(False)
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if not self.getLocflag() and self.check4Loc():
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self.setLocflag(True)
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elif self.getLocflag() and not self.check4Loc():
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self.setLocflag(False)
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def autoPick(self):
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list = QListWidget()
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@ -783,12 +782,10 @@ class MainWindow(QMainWindow):
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num += len(phases)
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return num
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@property
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def locflag(self):
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def getLocflag(self):
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return self.loc
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@locflag.setter
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def locflag(self, value):
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def setLocflag(self, value):
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self.loc = value
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def updateStatus(self, message, duration=5000):
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59
autoPyLoT.py
59
autoPyLoT.py
@ -1,7 +1,6 @@
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#!/usr/bin/python
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# -*- coding: utf-8 -*-
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import os
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import argparse
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import glob
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@ -12,7 +11,7 @@ from pylot.core.read.data import Data
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from pylot.core.read.inputs import AutoPickParameter
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from pylot.core.util.structure import DATASTRUCTURE
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from pylot.core.pick.autopick import autopickevent
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from pylot.core.pick.utils import writephases
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from pylot.core.loc.nll import *
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from pylot.core.util.version import get_git_version as _getVersionString
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__version__ = _getVersionString()
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@ -79,12 +78,11 @@ def autoPyLoT(inputfile):
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phasef = parameter.getParam('phasefile')
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phasefile = '%s/obs/%s' % (nllocroot, phasef)
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# get name of NLLoc-control file
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locf = parameter.getParam('locfile')
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locfile = '%s/run/%s' % (nllocroot, locf)
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# patter of NLLoc ttimes from location grid
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ctrf = parameter.getParam('ctrfile')
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ctrfile = '%s/run/%s' % (nllocroot, ctrf)
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# pattern of NLLoc ttimes from location grid
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ttpat = parameter.getParam('ttpatter')
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ttpatter = '%s/time/%s' % (nllocroot, ttpat)
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# patter of NLLoc-output file
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# pattern of NLLoc-output file
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nllocoutpatter = parameter.getParam('outpatter')
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else:
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locflag = 0
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@ -110,30 +108,18 @@ def autoPyLoT(inputfile):
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# locating
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if locflag == 1:
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# write phases to NLLoc-phase file
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writephases(picks, 'NLLoc', phasefile)
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picksExport(picks, 'NLLoc', phasefile)
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# For locating the event the NLLoc-control file has to be modified!
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# create comment line for NLLoc-control file
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# NLLoc-output file
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evID = event[string.rfind(event, "/") + 1 : len(events) - 1]
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nllocout = '%s/loc/%s_%s' % (nllocroot, evID, nllocoutpatter)
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locfiles = 'LOCFILES %s NLLOC_OBS %s %s 0' % (phasefile, ttpatter, nllocout)
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print ("Modifying NLLoc-control file %s ..." % locfile)
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# modification of NLLoc-control file
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filedata = None
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nllfile = open(locfile, 'r')
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filedata = nllfile.read()
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if filedata.find(locfiles) < 0:
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# replace old command
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filedata = filedata.replace('LOCFILES', locfiles)
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nllfile = open(locfile, 'w')
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nllfile.write(filedata)
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nllfile.close()
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nllocout = '%s_%s' % (evID, nllocoutpatter)
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# create comment line for NLLoc-control file
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modifyInputFile(ctrf, nllocroot, nllocout, phasef, ttpat)
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# locate the event
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subprocess.call([nlloccall, locfile])
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locate(nlloccall, ctrfile)
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# !iterative picking if traces remained unpicked or with bad picks!
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# !iterative picking if traces remained unpicked or occupied with bad picks!
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# get theoretical onset times for picks with weights >= 4
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# in order to reprocess them using smaller time windows
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##########################################################
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@ -165,28 +151,17 @@ def autoPyLoT(inputfile):
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# locating
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if locflag == 1:
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# write phases to NLLoc-phase file
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writephases(picks, 'NLLoc', phasefile)
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picksExport(picks, 'NLLoc', phasefile)
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# For locating the event the NLLoc-control file has to be modified!
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# create comment line for NLLoc-control file NLLoc-output file
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nllocout = '%s/loc/%s_%s' % (nllocroot, parameter.getParam('eventID'), nllocoutpatter)
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locfiles = 'LOCFILES %s NLLOC_OBS %s %s 0' % (phasefile, ttpatter, nllocout)
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print ("Modifying NLLoc-control file %s ..." % locfile)
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# modification of NLLoc-control file
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filedata = None
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nllfile = open(locfile, 'r')
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filedata = nllfile.read()
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if filedata.find(locfiles) < 0:
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# replace old command
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filedata = filedata.replace('LOCFILES', locfiles)
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nllfile = open(locfile, 'w')
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nllfile.write(filedata)
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nllfile.close()
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nllocout = '%s_%s' % (parameter.getParam('eventID'), nllocoutpatter)
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# create comment line for NLLoc-control file
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modifyInputFile(ctrf, nllocroot, nllocout, phasef, ttpat)
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# locate the event
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subprocess.call([nlloccall, locfile])
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locate(nlloccall, ctrfile)
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# !iterative picking if traces remained unpicked or with bad picks!
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# !iterative picking if traces remained unpicked or occupied with bad picks!
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# get theoretical onset times for picks with weights >= 4
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# in order to reprocess them using smaller time windows
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##########################################################
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@ -10,54 +10,72 @@ from pylot.core.util.version import get_git_version as _getVersionString
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__version__ = _getVersionString()
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def picksExport(picks, phasefile):
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def picksExport(picks, locrt, phasefile):
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'''
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Take <picks> dictionary and exports picking data to a NLLOC-obs <phasefile> without creating an ObsPy event object.
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Take <picks> dictionary and exports picking data to a NLLOC-obs
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<phasefile> without creating an ObsPy event object.
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:param picks: picking data dictionary
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:type picks: dict
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:param locrt: choose location routine
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:type locrt: str
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:param phasefile: complete path to the exporting obs file
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:type phasefile: str
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'''
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# write phases to NLLoc-phase file
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writephases(picks, 'NLLoc', phasefile)
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writephases(picks, locrt, phasefile)
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def modfiyInputFile(fn, root, outpath, phasefn, tttn):
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def modifyInputFile(ctrfn, root, nllocoutn, phasefn, tttn):
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'''
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:param ctrfn: name of NLLoc-control file
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:type: str
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:param fn:
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:param root:
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:param outpath:
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:param phasefile:
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:param tttable:
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:return:
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:param root: root path to NLLoc working directory
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:type: str
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:param nllocoutn: name of NLLoc-location output file
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:type: str
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:param phasefn: name of NLLoc-input phase file
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:type: str
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:param tttn: pattern of precalculated NLLoc traveltime tables
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:type: str
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'''
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# For locating the event we have to modify the NLLoc-control file!
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# For locating the event the NLLoc-control file has to be modified!
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# create comment line for NLLoc-control file NLLoc-output file
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print ("Modifying NLLoc-control file %s ..." % fn)
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nllocout = os.path.join(root,'loc', outpath)
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ctrfile = os.path.join(root, 'run', ctrfn)
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nllocout = os.path.join(root,'loc', nllocoutn)
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phasefile = os.path.join(root, 'obs', phasefn)
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tttable = os.path.join(root, 'time', tttn)
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locfiles = 'LOCFILES %s NLLOC_OBS %s %s 0\n' % (phasefile, tttable, nllocout)
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# modification of NLLoc-control file
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curlocfiles = getPatternLine(fn, 'LOCFILES')
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nllfile = open(fn, 'r')
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print ("Modifying NLLoc-control file %s ..." % ctrfile)
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curlocfiles = getPatternLine(ctrfile, 'LOCFILES')
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nllfile = open(ctrfile, 'r')
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filedata = nllfile.read()
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if filedata.find(locfiles) < 0:
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# replace old command
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filedata = filedata.replace(curlocfiles, locfiles)
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nllfile = open(fn, 'w')
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nllfile = open(ctrfile, 'w')
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nllfile.write(filedata)
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nllfile.close()
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def locate(call, fnin):
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'''
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Takes paths to NLLoc executable <call> and input parameter file <fnin> and starts the location calculation.
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Takes paths to NLLoc executable <call> and input parameter file <fnin>
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and starts the location calculation.
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:param call: full path to NLLoc executable
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:type call: str
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:param fnin: full path to input parameter file
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:type fnin: str
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'''
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# locate the event
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subprocess.call([call, fnin])
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@ -764,11 +764,23 @@ def autopickstation(wfstream, pickparam):
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lpickP = zdat[0].stats.starttime + lpickP
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epickP = zdat[0].stats.starttime + epickP
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mpickP = zdat[0].stats.starttime + mpickP
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else:
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# dummy values (start of seismic trace) in order to derive
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# theoretical onset times for iteratve picking
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lpickP = zdat[0].stats.starttime
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epickP = zdat[0].stats.starttime
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mpickP = zdat[0].stats.starttime
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if mpickS is not None and epickS is not None and mpickS is not None:
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lpickS = edat[0].stats.starttime + lpickS
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epickS = edat[0].stats.starttime + epickS
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mpickS = edat[0].stats.starttime + mpickS
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else:
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# dummy values (start of seismic trace) in order to derive
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# theoretical onset times for iteratve picking
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lpickS = edat[0].stats.starttime
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epickS = edat[0].stats.starttime
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mpickS = edat[0].stats.starttime
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# create dictionary
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# for P phase
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@ -961,46 +961,58 @@ def writephases(arrivals, fformat, filename):
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# write header
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fid.write('# EQEVENT: Label: EQ001 Loc: X 0.00 Y 0.00 Z 10.00 OT 0.00 \n')
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for key in arrivals:
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if arrivals[key]['P']['weight'] < 4:
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fm = arrivals[key]['P']['fm']
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if fm == None:
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fm = '?'
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onset = arrivals[key]['P']['mpp']
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year = onset.year
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month = onset.month
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day = onset.day
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hh = onset.hour
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mm = onset.minute
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ss = onset.second
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ms = onset.microsecond
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ss_ms = ss + ms / 1000000.0
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fid.write('%s ? ? ? P %s %d%02d%02d %02d%02d %7.4f GAU 0 0 0 0 1 \n' % (key,
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fm,
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year,
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month,
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day,
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hh,
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mm,
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ss_ms))
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if arrivals[key]['S']['weight'] < 4:
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fm = '?'
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onset = arrivals[key]['S']['mpp']
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year = onset.year
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month = onset.month
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day = onset.day
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hh = onset.hour
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mm = onset.minute
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ss = onset.second
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ms = onset.microsecond
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ss_ms = ss + ms / 1000000.0
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fid.write('%s ? ? ? S %s %d%02d%02d %02d%02d %7.4f GAU 0 0 0 0 1 \n' % (key,
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fm,
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year,
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month,
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day,
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hh,
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mm,
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ss_ms))
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# P onsets
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if arrivals[key]['P']:
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fm = arrivals[key]['P']['fm']
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if fm == None:
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fm = '?'
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onset = arrivals[key]['P']['mpp']
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year = onset.year
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month = onset.month
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day = onset.day
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hh = onset.hour
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mm = onset.minute
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ss = onset.second
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ms = onset.microsecond
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ss_ms = ss + ms / 1000000.0
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if arrivals[key]['P']['weight'] < 4:
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pweight = 1 # use pick
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else:
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pweight = 0 # do not use pick
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fid.write('%s ? ? ? P %s %d%02d%02d %02d%02d %7.4f GAU 0 0 0 0 %d \n' % (key,
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fm,
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year,
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month,
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day,
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hh,
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mm,
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ss_ms,
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pweight))
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# S onsets
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if arrivals[key]['S']:
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fm = '?'
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onset = arrivals[key]['S']['mpp']
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year = onset.year
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month = onset.month
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day = onset.day
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hh = onset.hour
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mm = onset.minute
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ss = onset.second
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ms = onset.microsecond
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ss_ms = ss + ms / 1000000.0
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if arrivals[key]['S']['weight'] < 4:
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sweight = 1 # use pick
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else:
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sweight = 0 # do not use pick
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fid.write('%s ? ? ? S %s %d%02d%02d %02d%02d %7.4f GAU 0 0 0 0 %d \n' % (key,
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fm,
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year,
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month,
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day,
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hh,
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mm,
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ss_ms,
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sweight))
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fid.close()
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