Rewrite check4rotated function to work with new Metadata class
This commit is contained in:
Darius Arnold
parent
6c162fc94a
commit
869ede96a9
@ -926,7 +926,10 @@ def get_stations(data):
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def check4rotated(data, metadata=None, verbosity=1):
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"""
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Check all traces in data. If a trace is not in ZNE rotation (last symbol of channel code is numeric) and the trace
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is in the metadata with azimuth and dip, rotate it to classical ZNE orientation.
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Rotating the traces requires them to be of the same length, so, all traces will be trimmed to a common length as a
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side effect.
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:param data: stream object containing seismic traces
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:type data: `~obspy.core.stream.Stream`
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:param metadata: tuple containing metadata type string and metadata parser object
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@ -943,100 +946,54 @@ def check4rotated(data, metadata=None, verbosity=1):
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Azimut and dip are fetched from metadata. To be rotated, traces of a station have to be cut to the same length.
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Returns unrotated traces of no metadata is provided
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:param wfstream: stream containing seismic traces
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:param wfstream: stream containing seismic traces of a station
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:type wfstream: `~obspy.core.stream.Stream`
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:param metadata: tuple containing metadata type string and metadata parser object
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:type metadata: (str, `~obspy.io.xseed.parser.Parser`)
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:return: stream object with traditionally oriented traces (ZNE)
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:rtype: `~obspy.core.stream.Stream`
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"""
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try:
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# indexing fails if metadata is None
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metadata[0]
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except TypeError:
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if verbosity:
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msg = 'Warning: could not rotate traces since no metadata was given\nset Inventory file!'
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print(msg)
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return wfstream
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if metadata[0] is None:
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# sometimes metadata is (None, (None,))
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if verbosity:
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msg = 'Warning: could not rotate traces since no metadata was given\nCheck inventory directory!'
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print(msg)
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return wfstream
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else:
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parser = metadata[1]
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def get_dip_azimut(parser, trace_id):
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"""
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Gets azimuth and dip by trace id out of the metadata parser
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:param parser: metadata parser object
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:type parser: `~obspy.io.xseed.parser.Parser`
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:param trace_id: eg. 'BW.RJOB..EHZ',
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:type trace_id: str
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:return: tuple containing dip and azimuth of the trace corresponding to trace_id
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:rtype: (float, float)
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"""
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dip = None
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azimut = None
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try:
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blockettes = parser._select(trace_id)
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except SEEDParserException as e:
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print(e)
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raise ValueError
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for blockette_ in blockettes:
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if blockette_.id != 52:
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continue
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dip = blockette_.dip
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azimut = blockette_.azimuth
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break
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if (dip is None or azimut is None) or (dip == 0 and azimut == 0):
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error_msg = 'Dip and azimuth not available for trace_id {}'.format(trace_id)
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raise ValueError(error_msg)
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return dip, azimut
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# check if any traces in this station need to be rotated
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trace_ids = [trace.id for trace in wfstream]
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for trace_id in trace_ids:
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orientation = trace_id[-1] # last letter if trace id is orientation code, ZNE or 123
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if orientation.isnumeric():
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# misaligned channels have a number as orientation
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azimuts = []
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dips = []
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for trace_id in trace_ids:
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try:
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dip, azimut = get_dip_azimut(parser, trace_id)
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except ValueError as e:
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print(e)
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print('Failed to rotate station {}, no azimuth or dip available in metadata'.format(trace_id))
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return wfstream
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azimuts.append(azimut)
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dips.append(dip)
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# to rotate all traces must have same length
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wfstream = trim_station_components(wfstream, trim_start=True, trim_end=True)
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z, n, e = rotate2zne(wfstream[0], azimuts[0], dips[0],
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wfstream[1], azimuts[1], dips[1],
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wfstream[2], azimuts[2], dips[2])
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print('check4rotated: rotated station {} to ZNE'.format(trace_id))
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z_index = dips.index(min(dips)) # get z-trace index (dip is measured from 0 to -90)
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wfstream[z_index].data = z
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wfstream[z_index].stats.channel = wfstream[z_index].stats.channel[0:-1] + 'Z'
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del trace_ids[z_index]
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for trace_id in trace_ids:
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dip, az = get_dip_azimut(parser, trace_id)
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trace = wfstream.select(id=trace_id)[0]
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if az > 315 or az <= 45 or az > 135 and az <= 225:
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trace.data = n
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trace.stats.channel = trace.stats.channel[0:-1] + 'N'
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elif az > 45 and az <= 135 or az > 225 and az <= 315:
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trace.data = e
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trace.stats.channel = trace.stats.channel[0:-1] + 'E'
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break
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else:
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continue
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orientations = [trace_id[-1] for trace_id in trace_ids]
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rotation_required = [orientation.isnumeric() for orientation in orientations]
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if any(rotation_required):
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try:
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azimuts = [metadata.get_coordinates(tr_id)['azimuth'] for tr_id in trace_ids]
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dips = [metadata.get_coordinates(tr_id)['dip'] for tr_id in trace_ids]
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except (KeyError, TypeError) as e:
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print('Failed to rotate trace {}, no azimuth or dip available in metadata'.format(trace_id))
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return wfstream
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# to rotate all traces must have same length, so trim them
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wfstream = trim_station_components(wfstream, trim_start=True, trim_end=True)
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z, n, e = rotate2zne(wfstream[0], azimuts[0], dips[0],
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wfstream[1], azimuts[1], dips[1],
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wfstream[2], azimuts[2], dips[2])
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print('check4rotated: rotated trace {} to ZNE'.format(trace_id))
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# replace old data with rotated data, change the channel code to ZNE
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z_index = dips.index(min(dips)) # get z-trace index, z has minimum dip of -90 (dip is measured from 0 to -90, with -90 being vertical)
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wfstream[z_index].data = z
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wfstream[z_index].stats.channel = wfstream[z_index].stats.channel[0:-1] + 'Z'
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del trace_ids[z_index]
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for trace_id in trace_ids:
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coordinates = metadata.get_coordinates(trace_id)
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dip, az = coordinates['dip'], coordinates['azimuth']
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trace = wfstream.select(id=trace_id)[0]
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if az > 315 or az <= 45 or az > 135 and az <= 225:
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trace.data = n
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trace.stats.channel = trace.stats.channel[0:-1] + 'N'
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elif az > 45 and az <= 135 or az > 225 and az <= 315:
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trace.data = e
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trace.stats.channel = trace.stats.channel[0:-1] + 'E'
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return wfstream
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if metadata is None:
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if verbosity:
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msg = 'Warning: could not rotate traces since no metadata was given\nset Inventory file!'
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print(msg)
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return data
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stations = get_stations(data)
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for station in stations: # loop through all stations and rotate data if neccessary
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wf_station = data.select(station=station)
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rotate_components(wf_station, metadata)
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