marcel/pylot
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Implented GUI dialog to select directory for autoPyLoT output.

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This commit is contained in:
Ludger Küperkoch 2017-04-05 11:38:43 +02:00
parent 4244047096
commit 94c1e85484
1 changed files with 51 additions and 25 deletions
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74
autoPyLoT.py
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@ -6,7 +6,7 @@ from __future__ import print_function
import argparse import argparse
import glob import glob
import os import os
import datetime
from obspy import read_events from obspy import read_events
import pylot.core.loc.hyposat as hyposat import pylot.core.loc.hyposat as hyposat
@ -16,6 +16,7 @@ import pylot.core.loc.hypodd as hypodd
import pylot.core.loc.focmec as focmec import pylot.core.loc.focmec as focmec
import pylot.core.loc.hash as hash import pylot.core.loc.hash as hash
import pylot.core.loc.nll as nll import pylot.core.loc.nll as nll
#from PySide.QtGui import QWidget, QInputDialog
from pylot.core.analysis.magnitude import MomentMagnitude, RichterMagnitude from pylot.core.analysis.magnitude import MomentMagnitude, RichterMagnitude
from pylot.core.io.data import Data from pylot.core.io.data import Data
from pylot.core.io.inputs import AutoPickParameter from pylot.core.io.inputs import AutoPickParameter
@ -28,7 +29,7 @@ from pylot.core.util.version import get_git_version as _getVersionString
__version__ = _getVersionString() __version__ = _getVersionString()
def autoPyLoT(inputfile): def autoPyLoT(inputfile, fnames=None, savepath=None):
""" """
Determine phase onsets automatically utilizing the automatic picking Determine phase onsets automatically utilizing the automatic picking
algorithms by Kueperkoch et al. 2010/2012. algorithms by Kueperkoch et al. 2010/2012.
@ -48,9 +49,9 @@ def autoPyLoT(inputfile):
Version {version} 2015\n Version {version} 2015\n
\n \n
Authors:\n Authors:\n
S. Wehling-Benatelli (Ruhr-Universität Bochum)\n S. Wehling-Benatelli (Ruhr-Universitaet Bochum)\n
L. Küperkoch (BESTEC GmbH, Landau i. d. Pfalz)\n L. Kueperkoch (BESTEC GmbH, Landau i. d. Pfalz)\n
K. Olbert (Christian-Albrechts Universität zu Kiel)\n K. Olbert (Christian-Albrechts Universitaet zu Kiel)\n
***********************************'''.format(version=_getVersionString()) ***********************************'''.format(version=_getVersionString())
print(splash) print(splash)
@ -70,7 +71,7 @@ def autoPyLoT(inputfile):
exf = ['root', 'dpath', 'dbase'] exf = ['root', 'dpath', 'dbase']
if parameter.hasParam('eventID'): if parameter.hasParam('eventID') and fnames == 'None':
dsfields['eventID'] = parameter.get('eventID') dsfields['eventID'] = parameter.get('eventID')
exf.append('eventID') exf.append('eventID')
@ -104,29 +105,51 @@ def autoPyLoT(inputfile):
print(" !!! ") print(" !!! ")
datapath = datastructure.expandDataPath() datapath = datastructure.expandDataPath()
if not parameter.hasParam('eventID'): if fnames == 'None' and not parameter.hasParam('eventID'):
# multiple event processing # multiple event processing
# read each event in database # read each event in database
events = [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)] events = [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)]
else: elif fnames == 'None' and parameter.hasParam('eventID'):
# single event processing # single event processing
events = glob.glob(os.path.join(datapath, parameter.get('eventID'))) events = glob.glob(os.path.join(datapath, parameter.get('eventID')))
else:
# autoPyLoT was initialized from GUI
events = fnames
for event in events: for event in events:
data.setWFData(glob.glob(os.path.join(datapath, event, '*'))) if fnames == 'None':
evID = os.path.split(event)[-1] data.setWFData(glob.glob(os.path.join(datapath, event, '*')))
# the following is necessary because within evID = os.path.split(event)[-1]
# multiple event processing no event ID is provided # the following is necessary because within
# in autopylot.in # multiple event processing no event ID is provided
try: # in autopylot.in
parameter.get('eventID') try:
except: parameter.get('eventID')
parameter.setParam(eventID=event) except:
print('Working on event %s' % event) now = datetime.datetime.now()
print(data) eventID = '%d%02d%02d%02d%02d' % (now.year,
now.month,
now.day,
now.hour,
now.minute)
parameter.setParam(eventID=eventID)
else:
data.setWFData(fnames)
event = savepath
now = datetime.datetime.now()
evID = '%d%02d%02d%02d%02d' % (now.year,
now.month,
now.day,
now.hour,
now.minute)
parameter.setParam(eventID=evID)
wfdat = data.getWFData() # all available streams wfdat = data.getWFData() # all available streams
wfdat = remove_underscores(wfdat) wfdat = remove_underscores(wfdat)
metadata = read_metadata(parameter.get('invdir')) metadata = read_metadata(parameter.get('invdir'))
corr_dat, rest_flag = restitute_data(wfdat.copy(), *metadata) corr_dat, rest_flag = restitute_data(wfdat.copy(), *metadata)
print('Working on event %s' % event)
print(data)
########################################################## ##########################################################
# !automated picking starts here! # !automated picking starts here!
picks = autopickevent(wfdat, parameter) picks = autopickevent(wfdat, parameter)
@ -283,7 +306,6 @@ def autoPyLoT(inputfile):
if __name__ == "__main__": if __name__ == "__main__":
from pylot.core.util.defaults import AUTOMATIC_DEFAULTS
# parse arguments # parse arguments
parser = argparse.ArgumentParser( parser = argparse.ArgumentParser(
description='''autoPyLoT automatically picks phase onset times using higher order statistics, description='''autoPyLoT automatically picks phase onset times using higher order statistics,
@ -292,13 +314,17 @@ if __name__ == "__main__":
parser.add_argument('-i', '-I', '--inputfile', type=str, parser.add_argument('-i', '-I', '--inputfile', type=str,
action='store', action='store',
help='''full path to the file containing the input help='''full path to the file containing the input
parameters for autoPyLoT''', parameters for autoPyLoT''')
default=AUTOMATIC_DEFAULTS parser.add_argument('-f', '-F', '--fnames', type=str,
) action='store',
help='''optional, list of data file names''')
parser.add_argument('-s', '-S', '--spath', type=str,
action=store,
help='''optional, save path for autoPyLoT output''')
parser.add_argument('-v', '-V', '--version', action='version', parser.add_argument('-v', '-V', '--version', action='version',
version='autoPyLoT ' + __version__, version='autoPyLoT ' + __version__,
help='show version information and exit') help='show version information and exit')
cla = parser.parse_args() cla = parser.parse_args()
autoPyLoT(str(cla.inputfile)) autoPyLoT(str(cla.inputfile), str(cla.fnames), str(cla.spath))