Implented GUI dialog to select directory for autoPyLoT output.
This commit is contained in:
Ludger Küperkoch
parent
4244047096
commit
94c1e85484
74
autoPyLoT.py
74
autoPyLoT.py
@ -6,7 +6,7 @@ from __future__ import print_function
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import argparse
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import glob
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import os
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import datetime
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from obspy import read_events
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import pylot.core.loc.hyposat as hyposat
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@ -16,6 +16,7 @@ import pylot.core.loc.hypodd as hypodd
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import pylot.core.loc.focmec as focmec
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import pylot.core.loc.hash as hash
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import pylot.core.loc.nll as nll
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#from PySide.QtGui import QWidget, QInputDialog
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from pylot.core.analysis.magnitude import MomentMagnitude, RichterMagnitude
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from pylot.core.io.data import Data
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from pylot.core.io.inputs import AutoPickParameter
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@ -28,7 +29,7 @@ from pylot.core.util.version import get_git_version as _getVersionString
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__version__ = _getVersionString()
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def autoPyLoT(inputfile):
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def autoPyLoT(inputfile, fnames=None, savepath=None):
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"""
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Determine phase onsets automatically utilizing the automatic picking
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algorithms by Kueperkoch et al. 2010/2012.
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@ -48,9 +49,9 @@ def autoPyLoT(inputfile):
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Version {version} 2015\n
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\n
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Authors:\n
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S. Wehling-Benatelli (Ruhr-Universität Bochum)\n
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L. Küperkoch (BESTEC GmbH, Landau i. d. Pfalz)\n
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K. Olbert (Christian-Albrechts Universität zu Kiel)\n
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S. Wehling-Benatelli (Ruhr-Universitaet Bochum)\n
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L. Kueperkoch (BESTEC GmbH, Landau i. d. Pfalz)\n
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K. Olbert (Christian-Albrechts Universitaet zu Kiel)\n
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***********************************'''.format(version=_getVersionString())
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print(splash)
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@ -70,7 +71,7 @@ def autoPyLoT(inputfile):
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exf = ['root', 'dpath', 'dbase']
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if parameter.hasParam('eventID'):
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if parameter.hasParam('eventID') and fnames == 'None':
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dsfields['eventID'] = parameter.get('eventID')
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exf.append('eventID')
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@ -104,29 +105,51 @@ def autoPyLoT(inputfile):
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print(" !!! ")
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datapath = datastructure.expandDataPath()
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if not parameter.hasParam('eventID'):
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if fnames == 'None' and not parameter.hasParam('eventID'):
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# multiple event processing
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# read each event in database
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events = [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)]
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else:
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elif fnames == 'None' and parameter.hasParam('eventID'):
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# single event processing
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events = glob.glob(os.path.join(datapath, parameter.get('eventID')))
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else:
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# autoPyLoT was initialized from GUI
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events = fnames
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for event in events:
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data.setWFData(glob.glob(os.path.join(datapath, event, '*')))
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evID = os.path.split(event)[-1]
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# the following is necessary because within
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# multiple event processing no event ID is provided
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# in autopylot.in
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try:
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parameter.get('eventID')
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except:
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parameter.setParam(eventID=event)
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print('Working on event %s' % event)
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print(data)
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if fnames == 'None':
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data.setWFData(glob.glob(os.path.join(datapath, event, '*')))
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evID = os.path.split(event)[-1]
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# the following is necessary because within
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# multiple event processing no event ID is provided
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# in autopylot.in
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try:
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parameter.get('eventID')
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except:
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now = datetime.datetime.now()
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eventID = '%d%02d%02d%02d%02d' % (now.year,
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now.month,
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now.day,
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now.hour,
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now.minute)
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parameter.setParam(eventID=eventID)
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else:
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data.setWFData(fnames)
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event = savepath
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now = datetime.datetime.now()
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evID = '%d%02d%02d%02d%02d' % (now.year,
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now.month,
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now.day,
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now.hour,
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now.minute)
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parameter.setParam(eventID=evID)
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wfdat = data.getWFData() # all available streams
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wfdat = remove_underscores(wfdat)
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metadata = read_metadata(parameter.get('invdir'))
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corr_dat, rest_flag = restitute_data(wfdat.copy(), *metadata)
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print('Working on event %s' % event)
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print(data)
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##########################################################
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# !automated picking starts here!
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picks = autopickevent(wfdat, parameter)
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@ -283,7 +306,6 @@ def autoPyLoT(inputfile):
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if __name__ == "__main__":
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from pylot.core.util.defaults import AUTOMATIC_DEFAULTS
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# parse arguments
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parser = argparse.ArgumentParser(
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description='''autoPyLoT automatically picks phase onset times using higher order statistics,
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@ -292,13 +314,17 @@ if __name__ == "__main__":
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parser.add_argument('-i', '-I', '--inputfile', type=str,
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action='store',
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help='''full path to the file containing the input
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parameters for autoPyLoT''',
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default=AUTOMATIC_DEFAULTS
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)
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parameters for autoPyLoT''')
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parser.add_argument('-f', '-F', '--fnames', type=str,
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action='store',
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help='''optional, list of data file names''')
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parser.add_argument('-s', '-S', '--spath', type=str,
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action=store,
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help='''optional, save path for autoPyLoT output''')
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parser.add_argument('-v', '-V', '--version', action='version',
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version='autoPyLoT ' + __version__,
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help='show version information and exit')
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cla = parser.parse_args()
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autoPyLoT(str(cla.inputfile))
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autoPyLoT(str(cla.inputfile), str(cla.fnames), str(cla.spath))
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