marcel/pylot
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Added getQualitiesFromXML and EventlistFromXML scripts and respective buttons

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Changed Icons for both Button - only temporary versions at the moment
This commit is contained in:
Jeldrik Gaal 2022-01-24 10:11:44 +01:00
parent 0ee239f4a6
commit a13defbe42
5 changed files with 1698 additions and 7584 deletions
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22
PyLoT.py
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@ -91,6 +91,8 @@ from pylot.core.util.array_map import Array_map
from pylot.core.util.structure import DATASTRUCTURE
from pylot.core.util.thread import Thread, Worker
from pylot.core.util.version import get_git_version as _getVersionString
from pylot.core.io.getEventListFromXML import geteventlistfromxml
from pylot.core.io.getQualitiesfromxml import getQualitiesfromxml
from pylot.styles import style_settings
@ -333,6 +335,9 @@ class MainWindow(QMainWindow):
compare_icon.addPixmap(QPixmap(':/icons/compare_button.png'))
qualities_icon = QIcon()
qualities_icon.addPixmap(QPixmap(':/icons/pick_qualities_button.png'))
eventlist_xml_icon = QIcon()
eventlist_xml_icon.addPixmap(QPixmap(':/icons/eventlist_xml_button.png'))
self.newProjectAction = self.createAction(self, "&New project ...",
self.createNewProject,
QKeySequence.New, newIcon,
@ -473,6 +478,11 @@ class MainWindow(QMainWindow):
# LK will be implemented soon, basic script has already (03/2021) been finished
self.qualities_action.setVisible(True)
self.eventlist_xml_action = self.createAction(parent=self, text='Create Eventlist from XML',
slot=self.eventlistXml, shortcut='Alt+X',
icon=eventlist_xml_icon, tip='Create an Eventlist from a XML File')
self.eventlist_xml_action.setEnabled(False)
printAction = self.createAction(self, "&Print event ...",
self.show_event_information, QKeySequence.Print,
print_icon,
@ -541,7 +551,7 @@ class MainWindow(QMainWindow):
' the complete project on grid engine.')
self.auto_pick_sge.setEnabled(False)
pickActions = (self.auto_tune, self.auto_pick, self.compare_action, self.qualities_action)
pickActions = (self.auto_tune, self.auto_pick, self.compare_action, self.qualities_action, self.eventlist_xml_action)
# pickToolBar = self.addToolBar("PickTools")
# pickToolActions = (selectStation, )
@ -1628,6 +1638,14 @@ class MainWindow(QMainWindow):
self.cmpw.show()
def pickQualities(self):
path = self._inputs['rootpath'] + '/' + self._inputs['datapath'] + '/' + self._inputs['database']
getQualitiesfromxml(path)
return
def eventlistXml(self):
path = self._inputs['rootpath'] + '/' + self._inputs['datapath'] + '/' + self._inputs['database']
outpath = self.project.location[:self.project.location.rfind('/')]
geteventlistfromxml(path, outpath)
return
def compareMulti(self):
@ -2067,6 +2085,7 @@ class MainWindow(QMainWindow):
if event.pylot_picks or event.pylot_autopicks:
self.locateEventAction.setEnabled(True)
self.qualities_action.setEnabled(True)
self.eventlist_xml_action.setEnabled(True)
if True in self.comparable.values():
self.compare_action.setEnabled(True)
self.draw()
@ -2139,6 +2158,7 @@ class MainWindow(QMainWindow):
self.loadpilotevent.setEnabled(False)
self.compare_action.setEnabled(False)
self.qualities_action.setEnabled(False)
self.eventlist_xml_action.setEnabled(False)
self.locateEventAction.setEnabled(False)
if not refresh_plot:
self.wf_scroll_area.setVisible(False)

1
icons.qrc
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@ -30,6 +30,7 @@
<file>icons/openloc.png</file>
<file>icons/compare_button.png</file>
<file>icons/pick_qualities_button.png</file>
<file>icons/eventlist_xml_button.png</file>
<file>icons/locate_button.png</file>
<file>icons/Matlab_PILOT_icon.png</file>
<file>icons/printer.png</file>

9041
icons_rc_2.py
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File diff suppressed because it is too large Load Diff

79
pylot/core/io/getEventListFromXML.py Normal file
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@ -0,0 +1,79 @@
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Script to get event parameters from PyLoT-xml file to write
them into eventlist.
LK, igem, 03/2021
Edited for use in PyLoT
JG, igem, 01/2022
"""
import pdb
import os
import argparse
import numpy as np
import matplotlib.pyplot as plt
from obspy.core.event import read_events
from pyproj import Proj
import glob
"""
Creates an eventlist file summarizing all events found in a certain folder. Only called by pressing UI Button eventlis_xml_action
:rtype:
:param path: Path to root folder where single Event folder are to found
"""
def geteventlistfromxml(path, outpath):
p = Proj(proj='utm', zone=32, ellps='WGS84')
# open eventlist file and write header
evlist = outpath + '/eventlist'
evlistobj = open(evlist, 'w')
evlistobj.write('EventID Date To Lat Lon EAST NORTH Dep Ml NoP NoS RMS errH errZ Gap \n')
# data path
dp = path + "/e*/*.xml"
# list of all available xml-files
xmlnames = glob.glob(dp)
# read all onset weights
for names in xmlnames:
print("Getting location parameters from {}".format(names))
cat = read_events(names)
try:
st = cat.events[0].origins[0].time
Lat = cat.events[0].origins[0].latitude
Lon = cat.events[0].origins[0].longitude
EAST, NORTH = p(Lon, Lat)
Dep = cat.events[0].origins[0].depth / 1000
Ml = cat.events[0].magnitudes[1].mag
NoP = []
NoS = []
except IndexError:
print ('Insufficient data found for event (not localised): ' + names.split('/')[-1].split('_')[-1][:-4] + ' Skipping event for eventlist.' )
continue
for i in range(len(cat.events[0].origins[0].arrivals)):
if cat.events[0].origins[0].arrivals[i].phase == 'P':
NoP.append(cat.events[0].origins[0].arrivals[i].phase)
elif cat.events[0].origins[0].arrivals[i].phase == 'S':
NoS.append(cat.events[0].origins[0].arrivals[i].phase)
#NoP = cat.events[0].origins[0].quality.used_station_count
errH = cat.events[0].origins[0].origin_uncertainty.max_horizontal_uncertainty
errZ = cat.events[0].origins[0].depth_errors.uncertainty
Gap = cat.events[0].origins[0].quality.azimuthal_gap
#evID = names.split('/')[6]
evID = names.split('/')[-1].split('_')[-1][:-4]
Date = str(st.year) + str('%02d' % st.month) + str('%02d' % st.day)
To = str('%02d' % st.hour) + str('%02d' % st.minute) + str('%02d' % st.second) + \
'.' + str('%06d' % st.microsecond)
# write into eventlist
evlistobj.write('%s %s %s %9.6f %9.6f %13.6f %13.6f %8.6f %3.1f %d %d NaN %d %d %d\n' %(evID, \
Date, To, Lat, Lon, EAST, NORTH, Dep, Ml, len(NoP), len(NoS), errH, errZ, Gap))
print ('Adding Event ' + names.split('/')[-1].split('_')[-1][:-4] + ' to eventlist')
print('Eventlist created and saved in: ' + outpath)
evlistobj.close()

139
pylot/core/io/getQualitiesfromxml.py Normal file
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@ -0,0 +1,139 @@
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Script to get onset uncertainties from Quakeml.xml files created by PyLoT.
Uncertainties are tranformed into quality classes and visualized via histogram if desired.
Ludger Küperkoch, BESTEC GmbH, 07/2017
rev.: Ludger Küperkoch, igem, 10/2020
Edited for usage in PyLoT: Jeldrik Gaal, igem, 01/2022
"""
import argparse
import numpy as np
import matplotlib.pyplot as plt
from obspy.core.event import read_events
import glob
def getQualitiesfromxml(path):
# uncertainties
ErrorsP = [0.02, 0.04, 0.08, 0.16]
ErrorsS = [0.04, 0.08, 0.16, 0.32]
Pw0 = []
Pw1 = []
Pw2 = []
Pw3 = []
Pw4 = []
Sw0 = []
Sw1 = []
Sw2 = []
Sw3 = []
Sw4 = []
# data path
dp = path + '/e*/*.xml'
# list of all available xml-files
xmlnames = glob.glob(dp)
# read all onset weights
for names in xmlnames:
print("Getting onset weights from {}".format(names))
cat = read_events(names)
arrivals = cat.events[0].picks
for Pick in arrivals:
if Pick.phase_hint[0] == 'P':
if Pick.time_errors.uncertainty <= ErrorsP[0]:
Pw0.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsP[0] and \
Pick.time_errors.uncertainty <= ErrorsP[1]:
Pw1.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsP[1] and \
Pick.time_errors.uncertainty <= ErrorsP[2]:
Pw2.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsP[2] and \
Pick.time_errors.uncertainty <= ErrorsP[3]:
Pw3.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsP[3]:
Pw4.append(Pick.time_errors.uncertainty)
else:
pass
elif Pick.phase_hint[0] == 'S':
if Pick.time_errors.uncertainty <= ErrorsS[0]:
Sw0.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsS[0] and \
Pick.time_errors.uncertainty <= ErrorsS[1]:
Sw1.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsS[1] and \
Pick.time_errors.uncertainty <= ErrorsS[2]:
Sw2.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsS[2] and \
Pick.time_errors.uncertainty <= ErrorsS[3]:
Sw3.append(Pick.time_errors.uncertainty)
elif Pick.time_errors.uncertainty > ErrorsS[3]:
Sw4.append(Pick.time_errors.uncertainty)
else:
pass
else:
print("Phase hint not defined for picking!")
pass
# get percentage of weights
numPweights = np.sum([len(Pw0), len(Pw1), len(Pw2), len(Pw3), len(Pw4)])
numSweights = np.sum([len(Sw0), len(Sw1), len(Sw2), len(Sw3), len(Sw4)])
try:
P0perc = 100.0 / numPweights * len(Pw0)
except:
P0perc = 0
try:
P1perc = 100.0 / numPweights * len(Pw1)
except:
P1perc = 0
try:
P2perc = 100.0 / numPweights * len(Pw2)
except:
P2perc = 0
try:
P3perc = 100.0 / numPweights * len(Pw3)
except:
P3perc = 0
try:
P4perc = 100.0 / numPweights * len(Pw4)
except:
P4perc = 0
try:
S0perc = 100.0 / numSweights * len(Sw0)
except:
Soperc = 0
try:
S1perc = 100.0 / numSweights * len(Sw1)
except:
S1perc = 0
try:
S2perc = 100.0 / numSweights * len(Sw2)
except:
S2perc = 0
try:
S3perc = 100.0 / numSweights * len(Sw3)
except:
S3perc = 0
try:
S4perc = 100.0 / numSweights * len(Sw4)
except:
S4perc = 0
weights = ('0', '1', '2', '3', '4')
y_pos = np.arange(len(weights))
width = 0.34
p1, = plt.bar(0 - width, P0perc, width, color='black')
p2, = plt.bar(0, S0perc, width, color='red')
plt.bar(y_pos - width, [P0perc, P1perc, P2perc, P3perc, P4perc], width, color='black')
plt.bar(y_pos, [S0perc, S1perc, S2perc, S3perc, S4perc], width, color='red')
plt.ylabel('%')
plt.xticks(y_pos, weights)
plt.xlim([-0.5, 4.5])
plt.xlabel('Qualities')
plt.title('{0} P-Qualities, {1} S-Qualities'.format(numPweights, numSweights))
plt.legend([p1, p2], ['P-Weights', 'S-Weights'])
plt.show()