now cf is an CharacteristicFunction object and not an array (changes should also be made to the caller run_makeCF.py)

pylot/core/pick/CharFuns.py

@@ -91,6 +91,10 @@ class CharacteristicFunction(object):
     def setTime2(self, t2):
         self.t2 = t2
 
+    def getTimeArray(self):
+        cut = self.getCut()
+        return np.arange(cut[0], cut[1], self.getIncrement())
+
     def getOrder(self):
         return self.order
 
@@ -98,6 +102,9 @@ class CharacteristicFunction(object):
         self.order = order
 
     def getIncrement(self):
+        """
+        :rtype : int
+        """
         return self.dt
 
     def getFnoise(self):
@@ -148,7 +155,7 @@ class CharacteristicFunction(object):
                 data = hh 
                 return data
         else:
-            data = self.orig_data
+            data = self.orig_data.copy()
             return data
        
     def calcCF(self, data=None):

pylot/core/pick/Picker.py

@@ -23,10 +23,10 @@ class AutoPicking(object):
     Superclass of different, automated picking algorithms applied on a CF determined
     using AIC, HOS, or AR prediction.
     ''' 
-    def __init__(self, cf, Tcf, dt, Tslope, aerr, TSNR, PickWindow, peps, Tsmooth):
+    def __init__(self, cf, Tslope, aerr, TSNR, PickWindow, peps, Tsmooth):
         '''
         :param: cf, characteristic function, on which the picking algorithm is applied
-        :type: array
+        :type: `~pylot.core.pick.CharFuns.CharacteristicFunction` object
 
         :param: Tcf, corresponding time array
         :type: array
@@ -54,9 +54,9 @@ class AutoPicking(object):
         :type: float
         '''
 
-        self.cf = cf
-        self.Tcf = Tcf
-        self.dt = dt
+        self.cf = cf.getCF()
+        self.Tcf = cf.getTimeArray()
+        self.dt = cf.getIncrement()
         self.setTslope(Tslope)
         self.setaerr(aerr)
         self.setTSNR(TSNR)
@@ -121,7 +121,7 @@ class AutoPicking(object):
         return self.Pick
 
     def calcPick(self):
-        self.Pick = Pick
+        self.Pick = None
  
 class AICPicker(AutoPicking):
     '''