new package io.py which should contain all import and export routines written by ourselves, such as reading old PILOT phase and location information file; implementation of the readPILOTevent function; new routines in utils: createArrival will be split into two functions: createPick and createArrival; also planned: createOrigin, createAmplitude and createMagnitude as well as giving createEvent functionality

pylot/RELEASE-VERSION

@@ -1 +1 @@
-ef50-dirty
+3667-dirty

pylot/core/read/io.py

@@ -0,0 +1,170 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import os
+import glob
+import scipy.io as sio
+import obspy.core.event as ope
+from obspy.core import UTCDateTime
+from pylot.core.util import getOwner, createPick, createArrival, createEvent
+
+def readPILOTEvent(phasfn=None, locfn=None, authority_id=None, **kwargs):
+    """
+    readPILOTEvent - function
+
+    Reads Matlab PHASES and LOC files written by Matlab versions of PILOT and
+    converts the data into an ObsPy Event object which is returned to the
+    calling program.
+
+    :rtype : ~obspy.core.event.Event
+    :param eventID:
+    :param authority:
+    :param kwargs:
+    :param phasfn: filename of the old PILOT Matlab PHASES file
+    :param locfn: filename of the old PILOT Matlab LOC file
+    :return event:  event object containing event and phase information
+    """
+    sdir = os.path.split(phasfn)[0]
+    if phasfn is not None and os.path.isfile(phasfn):
+        phases = sio.loadmat(phasfn)
+        phasctime = UTCDateTime(os.path.getmtime(phasfn))
+        phasauthor = getOwner(phasfn)
+    else:
+        phases = None
+        phasctime = None
+        phasauthor = None
+    if locfn is not None and os.path.isfile(locfn):
+        loc = sio.loadmat(locfn)
+        locctime = UTCDateTime(os.path.getmtime(locfn))
+        locauthor = getOwner(locfn)
+    else:
+        loc = None
+        locctime = None
+        locauthor = None
+    pickcinfo = ope.CreationInfo(agency_id=authority_id,
+                                 author=phasauthor,
+                                 creation_time=phasctime)
+    loccinfo = ope.CreationInfo(agency_id=authority_id,
+                                author=locauthor,
+                                creation_time=locctime)
+    np = 0
+    try:
+        eventNum = loc['ID'][0]
+
+        # retrieve eventID for the actual database
+        idsplit = eventNum.split('.')
+
+        # retrieve date information
+        julday = int(idsplit[1])
+        year = int(idsplit[2])
+        hour = int(loc['hh'])
+        minute = int(loc['mm'])
+        second = int(loc['ss'])
+
+        if UTCDateTime(year=year+2000) < UTCDateTime.utcnow():
+            year += 2000
+        else:
+            year += 1900
+
+        eventDate = UTCDateTime(year=year, julday=julday, hour=hour,
+                                minute=minute, second=second)
+
+        stations = [stat for stat in phases['stat'][0:-1:3]]
+
+        eventid = 'loc/' + eventNum
+        evresID = ope.ResourceIdentifier(id=eventid)
+        evresID.convertIDToQuakeMLURI(authority_id=authority_id)
+        event = ope.Event(resource_id=evresID)
+        event.creation_info = loccinfo
+        etype = ope.EventType('earthquake')
+        event.event_type = etype
+        for n, pick in enumerate(phases['Ptime']):
+            kwargs = {'year':int(pick[0]),
+                      'month':int(pick[1]),
+                      'day':int(pick[2]),
+                      'hour':int(pick[3]),
+                      'minute':int(pick[4]),
+                      'second':int(str(pick[5]).split('.')[0]),
+                      'microsecond':int(str(pick[5]).split('.')[1][0:6])}
+            spick = phases['Stime'][n]
+            if spick[0] > 0:
+                skwargs = {'year':int(spick[0]),
+                           'month':int(spick[1]),
+                           'day':int(spick[2]),
+                           'hour':int(spick[3]),
+                           'minute':int(spick[4]),
+                           'second':int(str(spick[5]).split('.')[0]),
+                           'microsecond':int(str(spick[5]).split('.')[1][0:6])}
+                spicktime = UTCDateTime(**skwargs)
+            else:
+                spicktime = None
+            ppicktime = UTCDateTime(**kwargs)
+
+            for picktime, phase in [(ppicktime, 'P'), (spicktime, 'S')]:
+                if phase == 'P':
+                    wffn = os.path.join([sdir, '{0}*{1}*'.format(stations[n], 'z')])
+                else:
+                    wffn = os.path.join([sdir, '{0}*{1}*'.format(stations[n], '[ne]')])
+                pick, arrival, np = createArrival(np, picktime, eventNum,
+                                                  stations[n], pickcinfo, phase,
+                                                  wffn, authority_id)
+                event.picks.append(pick)
+
+            origID = 'orig/' + genID
+            origresID = ResourceIdentifier(id=origID)
+            origresID.convertIDToQuakeMLURI(authority_id='BUG')
+            origin = Origin()
+            origin.resource_id = origresID
+            otime = self.location[eventid]['Location']['Origin time']
+            origin.time = UTCDateTime(otime)
+            origin.creation_info = self.cinfo
+            HW = self.location[eventid]['Location']['Hochwert']
+            RW = self.location[eventid]['Location']['Rechtswert']
+            LAT, LON = coordTrans(HW, RW, tosys=GPS)
+            origin.latitude = LAT
+            origin.longitude = LON
+            origin.depth = 1000.
+            origin.depth_type = OriginDepthType('operator assigned')
+            origin.evaluation_mode = 'automatic'
+            origin.arrivals.append(arrival)
+
+            amplID = 'corrampl/' + genID
+            amplresID = ResourceIdentifier(id=amplID)
+            amplresID.convertIDToQuakeMLURI(authority_id='BUG')
+            amplitude = Amplitude()
+            amplitude.resource_id = amplresID
+            amplitude.creation_info = self.cinfo
+            amp = self.data[eventid][phase]['Amplitude']*1e-9
+            amplitude.generic_amplitude = amp
+            amplitude.unit = AmplitudeUnit('m/s')
+            amplitude.magnitude_hint = 'Ml'
+            amplitude.type = AmplitudeCategory('point')
+            amplitude.pick_id = pickresID
+
+            magnID = 'corrmag/' + genID
+            magnresID = ResourceIdentifier(id=magnID)
+            magnresID.convertIDToQuakeMLURI(authority_id='BUG')
+            magnitude = Magnitude()
+            magnitude.resource_id = magnresID
+            magnitude.creation_info = self.cinfo
+            magnitude.origin_id = origresID
+            mag = self.location[eventid]['Ml']
+            magnitude.mag = mag
+            magnitude.magnitude_type = 'Ml'
+
+            event = Event(resource_id=evresID)
+            event.creation_info = self.cinfo
+            etype = EventType('earthquake')
+            event.event_type = etype
+            edesc = EventDescription(text='Prosper Haniel (induced)')
+            event.event_descriptions.append(edesc)
+            event.picks.append(pick)
+            event.origins.append(origin)
+            event.magnitudes.append(magnitude)
+            event.amplitudes.append(amplitude)
+    except AttributeError, e:
+        raise AttributeError('{0} - Matlab LOC file contain \
+                              insufficient data!'.format(e))
+
+
+

pylot/core/util/__init__.py

@@ -5,6 +5,8 @@ from pylot.core.util.errors import FormatError
 from pylot.core.util.layouts import layoutStationButtons
 from pylot.core.util.utils import fnConstructor
 from pylot.core.util.utils import createEvent
+from pylot.core.util.utils import getOwner
+from pylot.core.util.utils import createArrival
 from pylot.core.util.widgets import PickDlg
 from pylot.core.util.widgets import HelpForm
 from pylot.core.util.widgets import FilterOptionsDialog

pylot/core/util/errors.py

@@ -10,4 +10,4 @@ class OptionsError(Exception):
     pass
 
 class FormatError(Exception):
-    pass
+    pass

pylot/core/util/utils.py

@@ -2,8 +2,10 @@
 #
 # -*- coding: utf-8 -*-
 
+import os
+import pwd
 import re
-from obspy.core.event import *
+import obspy.core.event as ope
 
 def fnConstructor(s):
 
@@ -19,6 +21,34 @@ def fnConstructor(s):
     return fn
 
 def createEvent(origintime, latitude, longitude, depth, **kwargs):
-    evt = Event()
+    evt = ope.Event()
+
+def createArrival(picknum, picktime, eventnum, station, cinfo, phase, wfname,
+                  authority_id):
+    pickID = 'pick/' + eventnum + '/' + station + '/{0:3d}'.format(picknum)
+    pickresID = ope.ResourceIdentifier(id=pickID)
+    pickresID.convertIDToQuakeMLURI(authority_id=authority_id)
+    pick = ope.Pick()
+    pick.resource_id = pickresID
+    pick.time = picktime
+    pick.creation_info = cinfo
+    pick.phase_hint = phase
+    pick.waveform_id = ope.ResourceIdentifier(id=wfname, prefix='file:/')
+
+    arriID = 'arrival/' + eventnum + '/' + station + '/{0}'.format(phase)
+    arriresID = ope.ResourceIdentifier(id=arriID)
+    arriresID.convertIDToQuakeMLURI(authority_id=authority_id)
+    arrival = ope.Arrival()
+    arrival.resource_id = arriresID
+    arrival.creation_info = cinfo
+    arrival.pick_id = pickresID
+    arrival.phase = pick.phase_hint
+    azi = self.location[eventid]['Backazimuth'] - 180
+    arrival.azimuth = azi if azi > -180 else azi + 360
+    arrival.distance = self.location[eventid]['Distance']['deg']
+
+def getOwner(fn):
+    return pwd.getpwuid(os.stat(fn).st_uid).pw_name
+