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Introduced option for running autoPyLoT without location routine, if parameter nllocbin in autoPyLoT.in is not set.

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This commit is contained in:
Ludger Küperkoch 2015-10-28 09:13:13 +01:00
parent 43d243e0a1
commit fc319f7162
1 changed files with 76 additions and 70 deletions
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32
autoPyLoT.py
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@ -6,8 +6,7 @@ import os
import argparse import argparse
import glob import glob
import subprocess import subprocess
import matplotlib.pyplot as plt
import pdb
from obspy.core import read from obspy.core import read
from pylot.core.read.data import Data from pylot.core.read.data import Data
from pylot.core.read.inputs import AutoPickParameter from pylot.core.read.inputs import AutoPickParameter
@ -20,7 +19,7 @@ __version__ = _getVersionString()
def autoPyLoT(inputfile): def autoPyLoT(inputfile):
''' """
Determine phase onsets automatically utilizing the automatic picking Determine phase onsets automatically utilizing the automatic picking
algorithms by Kueperkoch et al. 2010/2012. algorithms by Kueperkoch et al. 2010/2012.
@ -32,7 +31,7 @@ def autoPyLoT(inputfile):
.. rubric:: Example .. rubric:: Example
''' """
print '************************************' print '************************************'
print '*********autoPyLoT starting*********' print '*********autoPyLoT starting*********'
print 'The Python picking and Location Tool' print 'The Python picking and Location Tool'
@ -57,9 +56,9 @@ def autoPyLoT(inputfile):
if parameter.hasParam('datastructure'): if parameter.hasParam('datastructure'):
datastructure = DATASTRUCTURE[parameter.getParam('datastructure')]() datastructure = DATASTRUCTURE[parameter.getParam('datastructure')]()
dsfields = {'root':parameter.getParam('rootpath'), dsfields = {'root' :parameter.getParam('rootpath'),
'dpath':parameter.getParam('datapath'), 'dpath' :parameter.getParam('datapath'),
'dbase':parameter.getParam('database')} 'dbase' :parameter.getParam('database')}
exf = ['root', 'dpath', 'dbase'] exf = ['root', 'dpath', 'dbase']
@ -70,9 +69,9 @@ def autoPyLoT(inputfile):
datastructure.modifyFields(**dsfields) datastructure.modifyFields(**dsfields)
datastructure.setExpandFields(exf) datastructure.setExpandFields(exf)
# get path to inventory or dataless-seed file with station meta data # check if default location routine NLLoc is available
invdir = parameter.getParam('invdir') if parameter.hasParam('nllocbin'):
locflag = 1
# get NLLoc-root path # get NLLoc-root path
nllocroot = parameter.getParam('nllocroot') nllocroot = parameter.getParam('nllocroot')
# get path to NLLoc executable # get path to NLLoc executable
@ -89,6 +88,9 @@ def autoPyLoT(inputfile):
ttpatter = '%s/time/%s' % (nllocroot, ttpat) ttpatter = '%s/time/%s' % (nllocroot, ttpat)
# patter of NLLoc-output file # patter of NLLoc-output file
nllocoutpatter = parameter.getParam('outpatter') nllocoutpatter = parameter.getParam('outpatter')
else:
locflag = 0
print ("!!No location routine available, autoPyLoT just picks the events without locating them!!")
# multiple event processing # multiple event processing
@ -97,7 +99,7 @@ def autoPyLoT(inputfile):
if not parameter.hasParam('eventID'): if not parameter.hasParam('eventID'):
for event in [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)]: for event in [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)]:
data.setWFData(glob.glob(os.path.join(datapath, event, '*'))) data.setWFData(glob.glob(os.path.join(datapath, event, '*')))
print 'Working on event %s' %event print 'Working on event %s' % event
print data print data
wfdat = data.getWFData() # all available streams wfdat = data.getWFData() # all available streams
@ -105,10 +107,12 @@ def autoPyLoT(inputfile):
# !automated picking starts here! # !automated picking starts here!
picks = autopickevent(wfdat, parameter) picks = autopickevent(wfdat, parameter)
##########################################################
# locating
if locflag == 1:
# write phases to NLLoc-phase file # write phases to NLLoc-phase file
writephases(picks, 'NLLoc', phasefile) writephases(picks, 'NLLoc', phasefile)
##########################################################
# For locating the events we have to modify the NLLoc-control file! # For locating the events we have to modify the NLLoc-control file!
# create comment line for NLLoc-control file # create comment line for NLLoc-control file
# NLLoc-output file # NLLoc-output file
@ -145,10 +149,12 @@ def autoPyLoT(inputfile):
# !automated picking starts here! # !automated picking starts here!
picks = autopickevent(wfdat, parameter) picks = autopickevent(wfdat, parameter)
##########################################################
# locating
if locflag == 1:
# write phases to NLLoc-phase file # write phases to NLLoc-phase file
writephases(picks, 'NLLoc', phasefile) writephases(picks, 'NLLoc', phasefile)
##########################################################
# For locating the event we have to modify the NLLoc-control file! # For locating the event we have to modify the NLLoc-control file!
# create comment line for NLLoc-control file NLLoc-output file # create comment line for NLLoc-control file NLLoc-output file
nllocout = '%s/loc/%s_%s' % (nllocroot, parameter.getParam('eventID'), nllocoutpatter) nllocout = '%s/loc/%s_%s' % (nllocroot, parameter.getParam('eventID'), nllocoutpatter)