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feature/port-to-py3 #11

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marcel merged 59 commits from feature/port-to-py3 into develop 2022-03-21 15:30:06 +01:00
Conversation 0 Commits 59 Files Changed 45 +151 -95
7 changed files with 151 additions and 95 deletions
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25
PyLoT.py
View File

@ -35,18 +35,18 @@ import traceback
import json
from datetime import datetime
matplotlib.use('Qt4Agg')
matplotlib.rcParams['backend.qt4'] = 'PySide'
matplotlib.rcParams['savefig.dpi'] = 300
matplotlib.use('Qt5Agg')
# matplotlib.rcParams['backend.qt4'] = 'PySide'
# matplotlib.rcParams['savefig.dpi'] = 300
from PySide import QtGui, QtCore
from PySide.QtCore import QCoreApplication, QSettings, Signal, QFile, \
from PySide2 import QtGui, QtCore, QtWidgets
from PySide2.QtCore import QCoreApplication, QSettings, Signal, QFile, \
QFileInfo, Qt, QSize
from PySide.QtGui import QMainWindow, QInputDialog, QIcon, QFileDialog, \
QWidget, QHBoxLayout, QVBoxLayout, QStyle, QKeySequence, QLabel, QFrame, QAction, \
QDialog, QApplication, QPixmap, QMessageBox, QSplashScreen, \
QActionGroup, QListWidget, QListView, QAbstractItemView, \
from PySide2.QtGui import QIcon, QKeySequence, QPixmap
from PySide2.QtWidgets import QMainWindow, QInputDialog, QFileDialog, \
QWidget, QHBoxLayout, QVBoxLayout, QStyle, QLabel, QFrame, QAction, \
QDialog, QErrorMessage, QApplication, QMessageBox, QSplashScreen, \
QActionGroup, QListWidget, QLineEdit, QListView, QAbstractItemView, \
QTreeView, QComboBox, QTabWidget, QPushButton, QGridLayout
import numpy as np
from obspy import UTCDateTime, Stream
@ -58,9 +58,10 @@ from pylot.core.util.obspyDMT_interface import check_obspydmt_structure
import pyqtgraph as pg
try:
from matplotlib.backends.backend_qt4agg import FigureCanvas
from matplotlib.backends.backend_qt5agg import FigureCanvas
except ImportError:
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
from matplotlib.figure import Figure
from pylot.core.analysis.magnitude import LocalMagnitude, MomentMagnitude

2
icons_rc_2.py
View File

@ -7,7 +7,7 @@
#
# WARNING! All changes made in this file will be lost!
from PySide import QtCore
from PySide2 import QtCore
qt_resource_data = "\
\x00\x00\x9e\x04\

8
icons_rc_3.py
View File

@ -7,9 +7,9 @@
#
# WARNING! All changes made in this file will be lost!
from PySide import QtCore
from PySide2 import QtCore
qt_resource_data = "\
qt_resource_data = b"\
\x00\x00\x9e\x04\
\x89\
\x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d\x49\x48\x44\x52\x00\
@ -109000,7 +109000,7 @@ qt_resource_data = "\
\x62\x6f\x64\x79\x3e\x0a\x3c\x2f\x68\x74\x6d\x6c\x3e\x0a\
"
qt_resource_name = "\
qt_resource_name = b"\
\x00\x04\
\x00\x06\xec\x30\
\x00\x68\
@ -109235,7 +109235,7 @@ qt_resource_name = "\
\x00\x6e\x00\x64\x00\x65\x00\x78\x00\x2e\x00\x68\x00\x74\x00\x6d\x00\x6c\
"
qt_resource_struct = "\
qt_resource_struct = b"\
\x00\x00\x00\x00\x00\x02\x00\x00\x00\x03\x00\x00\x00\x01\
\x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x3a\
\x00\x00\x00\x0e\x00\x02\x00\x00\x00\x35\x00\x00\x00\x05\

14
pylot/core/io/data.py
View File

@ -8,7 +8,7 @@ from obspy.core import read, Stream, UTCDateTime
from obspy.core.event import Event as ObsPyEvent
from obspy.io.sac import SacIOError
from PySide.QtGui import QMessageBox
from PySide2.QtWidgets import QMessageBox
import pylot.core.loc.velest as velest
import pylot.core.loc.focmec as focmec
@ -21,14 +21,18 @@ from pylot.core.util.obspyDMT_interface import qml_from_obspyDMT
from pylot.core.util.utils import fnConstructor, full_range, check4rotated, \
check4gapsAndMerge, trim_station_components
try:
str_TypeLst = [str, unicode] # if python 2.X
except NameError:
str_TypeLst = [str] # if python 3.*
class Data(object):
"""
Data container with attributes wfdata holding ~obspy.core.stream.
:type parent: PySide.QtGui.QWidget object, optional
:param parent: A PySide.QtGui.QWidget object utilized when
called by a GUI to display a PySide.QtGui.QMessageBox instead of printing
:type parent: PySide2.QtWidgets.QWidget object, optional
:param parent: A PySide2.QtWidgets.QWidget object utilized when
called by a GUI to display a PySide2.QtWidgets.QMessageBox instead of printing
to standard out.
:type evtdata: ~obspy.core.event.Event object, optional
:param evtdata ~obspy.core.event.Event object containing all derived or
@ -48,7 +52,7 @@ class Data(object):
elif isinstance(evtdata, dict):
evt = readPILOTEvent(**evtdata)
evtdata = evt
elif type(evtdata) in [str, unicode]:
elif type(evtdata) in str_TypeLst:
try:
cat = read_events(evtdata)
if len(cat) is not 1:

141
pylot/core/util/array_map.py
View File

@ -6,19 +6,26 @@ import matplotlib.pyplot as plt
import numpy as np
import obspy
import traceback
from PySide import QtGui
from PySide2 import QtWidgets
from matplotlib.figure import Figure
from mpl_toolkits.axes_grid1.inset_locator import inset_axes
from mpl_toolkits.basemap import Basemap
# from mpl_toolkits.basemap import Basemap
from scipy.interpolate import griddata
import cartopy.crs as ccrs
import cartopy.feature as cf
from cartopy.feature import ShapelyFeature
from cartopy.io.shapereader import Reader
from cartopy.mpl.gridliner import LONGITUDE_FORMATTER, LATITUDE_FORMATTER
from pylot.core.util.widgets import PickDlg, PylotCanvas
from pylot.core.pick.utils import get_quality_class
plt.interactive(False)
class Array_map(QtGui.QWidget):
class Array_map(QtWidgets.QWidget):
def __init__(self, parent, metadata, parameter=None, figure=None, annotate=True, pointsize=25.,
linewidth=1.5, width=5e6, height=2e6):
'''
@ -27,7 +34,7 @@ class Array_map(QtGui.QWidget):
:param parameter: object of PyLoT parameter class
:param figure:
'''
QtGui.QWidget.__init__(self)
QtWidgets.QWidget.__init__(self)
assert (parameter != None or parent != None), 'either parent or parameter has to be set'
self._parent = parent
self.metadata = metadata
@ -210,7 +217,9 @@ class Array_map(QtGui.QWidget):
return
x = event.xdata
y = event.ydata
lat, lon = self.basemap(x, y, inverse=True)
# lat, lon = self.basemap(x, y, inverse=True)
lat = y
lon = x
self.status_label.setText('Latitude: {}, Longitude: {}'.format(lat, lon))
def current_picks_dict(self):
@ -224,43 +233,43 @@ class Array_map(QtGui.QWidget):
if not self.figure:
self.figure = Figure()
self.status_label = QtGui.QLabel()
self.status_label = QtWidgets.QLabel()
self.main_ax = self.figure.add_subplot(111)
#self.main_ax.set_facecolor('0.7')
self.canvas = PylotCanvas(self.figure, parent=self._parent, multicursor=True,
panZoomX=False, panZoomY=False)
self.main_box = QtGui.QVBoxLayout()
self.main_box = QtWidgets.QVBoxLayout()
self.setLayout(self.main_box)
self.top_row = QtGui.QHBoxLayout()
self.top_row = QtWidgets.QHBoxLayout()
self.main_box.addLayout(self.top_row, 1)
self.comboBox_phase = QtGui.QComboBox()
self.comboBox_phase = QtWidgets.QComboBox()
self.comboBox_phase.insertItem(0, 'P')
self.comboBox_phase.insertItem(1, 'S')
self.comboBox_am = QtGui.QComboBox()
self.comboBox_am = QtWidgets.QComboBox()
self.comboBox_am.insertItem(0, 'hybrid (prefer manual)')
self.comboBox_am.insertItem(1, 'manual')
self.comboBox_am.insertItem(2, 'auto')
self.annotations_box = QtGui.QCheckBox('Annotate')
self.annotations_box = QtWidgets.QCheckBox('Annotate')
self.annotations_box.setChecked(True)
self.auto_refresh_box = QtGui.QCheckBox('Automatic refresh')
self.auto_refresh_box = QtWidgets.QCheckBox('Automatic refresh')
self.auto_refresh_box.setChecked(True)
self.refresh_button = QtGui.QPushButton('Refresh')
self.cmaps_box = QtGui.QComboBox()
self.refresh_button = QtWidgets.QPushButton('Refresh')
self.cmaps_box = QtWidgets.QComboBox()
self.cmaps_box.setMaxVisibleItems(20)
[self.cmaps_box.addItem(map_name) for map_name in sorted(plt.colormaps())]
# try to set to hsv as default
self.cmaps_box.setCurrentIndex(self.cmaps_box.findText('hsv'))
self.top_row.addWidget(QtGui.QLabel('Select a phase: '))
self.top_row.addWidget(QtWidgets.QLabel('Select a phase: '))
self.top_row.addWidget(self.comboBox_phase)
self.top_row.setStretch(1, 1) # set stretch of item 1 to 1
self.top_row.addWidget(QtGui.QLabel('Pick type: '))
self.top_row.addWidget(QtWidgets.QLabel('Pick type: '))
self.top_row.addWidget(self.comboBox_am)
self.top_row.setStretch(3, 1) # set stretch of item 1 to 1
self.top_row.addWidget(self.cmaps_box)
@ -332,32 +341,53 @@ class Array_map(QtGui.QWidget):
self.xdim = self.get_max_from_stations('x') - self.get_min_from_stations('x')
self.ydim = self.get_max_from_stations('y') - self.get_min_from_stations('y')
def init_basemap(self, resolution='l'):
# basemap = Basemap(projection=projection, resolution = resolution, ax=self.main_ax)
basemap = Basemap(projection='lcc', resolution=resolution, ax=self.main_ax,
width=self.width, height=self.height,
lat_0=(self.latmin + self.latmax) / 2.,
lon_0=(self.lonmin + self.lonmax) / 2.)
def init_basemap(self):
# initialize cartopy coordinate reference system
proj = ccrs.PlateCarree(central_longitude=(self.lonmin + self.lonmax) / 2.)
crtpy_map = plt.axes(projection=proj)
mapxtent = [self.lonmin, self.lonmax, self.latmin, self.latmax] # add conditional buffer
crtpy_map.set_extent(mapxtent) # find way to directly open zoomed map on area
# basemap.fillcontinents(color=None, lake_color='aqua',zorder=1)
basemap.drawmapboundary(zorder=2) # fill_color='darkblue')
basemap.shadedrelief(zorder=3)
basemap.drawcountries(zorder=4)
basemap.drawstates(zorder=5)
basemap.drawcoastlines(zorder=6)
# labels = [left,right,top,bottom]
parallels = np.arange(-90, 90, 5.)
parallels_small = np.arange(-90, 90, 2.5)
basemap.drawparallels(parallels_small, linewidth=0.5, zorder=7)
basemap.drawparallels(parallels, zorder=7)#, labels=[1, 1, 0, 0])
meridians = np.arange(-180, 180, 5.)
meridians_small = np.arange(-180, 180, 2.5)
basemap.drawmeridians(meridians_small, linewidth=0.5, zorder=7)
basemap.drawmeridians(meridians, zorder=7)#, labels=[0, 0, 1, 1])
self.basemap = basemap
# add features (option for plate boundaries)
crtpy_map.add_feature(cf.LAND) # replace with background map
crtpy_map.add_feature(cf.OCEAN)
crtpy_map.add_feature(cf.BORDERS, linestyle=':') # include province borders
crtpy_map.add_feature(cf.COASTLINE)
# fname = 'PB2002_plates.shp'
# plateBoundaries = ShapelyFeature(Reader(fname).geometries(), ccrs.PlateCarree(), facecolor='none', edgecolor='r')
# crtpy_map.add_feature(plateBoundaries)
# parallels and meridians
gridlines = crtpy_map.gridlines(draw_labels=True, alpha=0.5, zorder=7)
gridlines.xformatter = LONGITUDE_FORMATTER
gridlines.yformatter = LATITUDE_FORMATTER
self.basemap = crtpy_map
self.figure._tight = True
self.figure.tight_layout()
# basemap = Basemap(projection=projection, resolution = resolution, ax=self.main_ax)
# basemap = Basemap(projection='lcc', resolution=resolution, ax=self.main_ax, width=self.width, height=self.height, lat_0=(self.latmin + self.latmax) / 2., lon_0=(self.lonmin + self.lonmax) / 2.)
#
# basemap.fillcontinents(color=None, lake_color='aqua',zorder=1)
# basemap.drawmapboundary(zorder=2) # fill_color='darkblue')
# basemap.shadedrelief(zorder=3)
# basemap.drawcountries(zorder=4)
# basemap.drawstates(zorder=5)
# basemap.drawcoastlines(zorder=6)
# labels = [left,right,top,bottom]
# parallels = np.arange(-90, 90, 5.)
# parallels_small = np.arange(-90, 90, 2.5)
# basemap.drawparallels(parallels_small, linewidth=0.5, zorder=7)
# basemap.drawparallels(parallels, zorder=7)#, labels=[1, 1, 0, 0])
# meridians = np.arange(-180, 180, 5.)
# meridians_small = np.arange(-180, 180, 2.5)
# basemap.drawmeridians(meridians_small, linewidth=0.5, zorder=7)
# basemap.drawmeridians(meridians, zorder=7)#, labels=[0, 0, 1, 1])
# self.basemap = basemap
# self.figure._tight = True
# self.figure.tight_layout()
def init_lat_lon_grid(self, nstep=250):
# create a regular grid to display colormap
lataxis = np.linspace(self.latmin, self.latmax, nstep)
@ -408,9 +438,12 @@ class Array_map(QtGui.QWidget):
# self.test_gradient()
levels = np.linspace(self.get_min_from_picks(), self.get_max_from_picks(), nlevel)
self.contourf = self.basemap.contour(self.longrid, self.latgrid, self.picksgrid_active, levels,
linewidths=self.linewidth, latlon=True, zorder=8, alpha=0.7,
cmap=self.get_colormap())
# self.contourf = self.basemap.contour(self.longrid, self.latgrid, self.picksgrid_active, levels,
# linewidths=self.linewidth, latlon=True, zorder=8, alpha=0.7,
# cmap=self.get_colormap())
plt.contourf(self.longrid, self.latgrid, self.picksgrid_active, levels, linewidths=self.linewidth,
transform=ccrs.PlateCarree(), alpha=0.7, zorder=8)
def get_colormap(self):
return plt.get_cmap(self.cmaps_box.currentText())
@ -455,14 +488,18 @@ class Array_map(QtGui.QWidget):
def scatter_all_stations(self):
stations, lats, lons = self.get_st_lat_lon_for_plot()
#self.sc = self.basemap.scatter(lons, lats, s=self.pointsize, facecolor='none', latlon=True, marker='.',
# zorder=10, picker=True, edgecolor='0.5', label='Not Picked')
self.sc = self.basemap.scatter(lons, lats, s=self.pointsize, facecolor='none', latlon=True, marker='.',
zorder=10, picker=True, edgecolor='0.5', label='Not Picked')
zorder=10, picker=True, edgecolor='0.5', label='Not Picked', transform=ccrs.PlateCarree())
self.cid = self.canvas.mpl_connect('pick_event', self.onpick)
self._station_onpick_ids = stations
if self.eventLoc:
lats, lons = self.eventLoc
self.sc_event = self.basemap.scatter(lons, lats, s=2*self.pointsize, facecolor='red',
latlon=True, zorder=11, label='Event (might be outside map region)')
latlon=True, zorder=11, label='Event (might be outside map region)', transform=ccrs.PlateCarree())
def scatter_picked_stations(self):
picks, uncertainties, lats, lons = self.get_picks_lat_lon()
@ -478,13 +515,13 @@ class Array_map(QtGui.QWidget):
# workaround because of an issue with latlon transformation of arrays with len <3
if len(lons) <= 2 and len(lats) <= 2:
self.sc_picked = self.basemap.scatter(lons[0], lats[0], s=sizes, edgecolors='white', cmap=cmap,
c=picks[0], latlon=True, zorder=11)
c=picks[0], latlon=True, zorder=11, transform=ccrs.PlateCarree())
if len(lons) == 2 and len(lats) == 2:
self.sc_picked = self.basemap.scatter(lons[1], lats[1], s=sizes, edgecolors='white', cmap=cmap,
c=picks[1], latlon=True, zorder=11)
c=picks[1], latlon=True, zorder=11, transform=ccrs.PlateCarree())
if len(lons) > 2 and len(lats) > 2:
self.sc_picked = self.basemap.scatter(lons, lats, s=sizes, edgecolors='white', cmap=cmap,
c=picks, latlon=True, zorder=11, label='Picked')
c=picks, latlon=True, zorder=11, label='Picked', transform=ccrs.PlateCarree())
def annotate_ax(self):
self.annotations = []
@ -607,8 +644,8 @@ class Array_map(QtGui.QWidget):
def zoom(self, event):
map = self.basemap
xlim = map.ax.get_xlim()
ylim = map.ax.get_ylim()
xlim = map.get_xlim()
ylim = map.get_ylim()
x, y = event.xdata, event.ydata
zoom = {'up': 1. / 2.,
'down': 2.}
@ -628,11 +665,11 @@ class Array_map(QtGui.QWidget):
if xl < map.xmin or yb < map.ymin or xr > map.xmax or yt > map.ymax:
xl, xr = map.xmin, map.xmax
yb, yt = map.ymin, map.ymax
map.ax.set_xlim(xl, xr)
map.ax.set_ylim(yb, yt)
map.ax.figure.canvas.draw()
map.set_xlim(xl, xr)
map.set_ylim(yb, yt)
map.figure.canvas.draw()
def _warn(self, message):
self.qmb = QtGui.QMessageBox(QtGui.QMessageBox.Icon.Warning,
self.qmb = QtWidgets.QMessageBox(QtWidgets.QMessageBox.Icon.Warning,
'Warning', message)
self.qmb.show()

27
pylot/core/util/thread.py
View File

@ -1,11 +1,8 @@
# -*- coding: utf-8 -*-
import sys, os, traceback
import multiprocessing
import os
import sys
import traceback
from PySide.QtCore import QThread, Signal, Qt, Slot, QRunnable, QObject
from PySide.QtGui import QDialog, QProgressBar, QLabel, QHBoxLayout
from PySide2.QtCore import QThread, Signal, Qt, Slot, QRunnable, QObject
from PySide2.QtWidgets import QDialog, QProgressBar, QLabel, QHBoxLayout, QPushButton
class Thread(QThread):
@ -49,7 +46,23 @@ class Thread(QThread):
# self.pb_widget.setWindowFlags(Qt.SplashScreen)
# self.pb_widget.setModal(True)
self.pb_widget.label.setText(self.progressText)
# generate widget if not given in init
if not self.pb_widget:
self.pb_widget = QDialog(self.parent())
self.pb_widget.setWindowFlags(Qt.SplashScreen)
self.pb_widget.setModal(True)
# add button
delete_button = QPushButton('X')
delete_button.clicked.connect(self.exit)
hl = QHBoxLayout()
pb = QProgressBar()
pb.setRange(0, 0)
hl.addWidget(pb)
hl.addWidget(QLabel(self.progressText))
if self.abortButton:
hl.addWidget(delete_button)
self.pb_widget.setLayout(hl)
self.pb_widget.show()
def hideProgressbar(self):

25
pylot/core/util/widgets.py
View File

@ -22,22 +22,23 @@ matplotlib.use('QT4Agg')
from matplotlib.figure import Figure
try:
from matplotlib.backends.backend_qt4agg import FigureCanvas
from matplotlib.backends.backend_qt5agg import FigureCanvas
except ImportError:
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt4agg import NavigationToolbar2QT
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT
from matplotlib.widgets import MultiCursor
from obspy import read
from PySide import QtCore, QtGui
from PySide.QtGui import QAction, QApplication, QCheckBox, QComboBox, \
from PySide2 import QtCore, QtGui
from PySide2.QtGui import QIcon, QPixmap, QKeySequence
from PySide2.QtWidgets import QAction, QApplication, QCheckBox, QComboBox, \
QDateTimeEdit, QDialog, QDialogButtonBox, QDoubleSpinBox, QGroupBox, \
QGridLayout, QFormLayout, QIcon, QLabel, QLineEdit, QMessageBox, \
QPixmap, QSpinBox, QTabWidget, QToolBar, QVBoxLayout, QHBoxLayout, QWidget, \
QPushButton, QFileDialog, QInputDialog, QKeySequence
from PySide.QtCore import QSettings, Qt, QUrl, Signal
from PySide.QtWebKit import QWebView
from obspy import Stream, Trace, UTCDateTime
QGridLayout, QLabel, QLineEdit, QMessageBox, \
QSpinBox, QTabWidget, QToolBar, QVBoxLayout, QHBoxLayout, QWidget, \
QPushButton, QFileDialog, QInputDialog
from PySide2.QtCore import QSettings, Qt, QUrl, Signal, Slot
from PySide2.QtWebEngineWidgets import QWebEngineView as QWebView
from obspy import Stream, UTCDateTime
from obspy.core.util import AttribDict
from obspy.taup import TauPyModel
from obspy.taup.utils import get_phase_names
@ -67,7 +68,7 @@ else:
raise ImportError('Could not determine python version.')
# workaround to prevent PyCharm from deleting icons_rc import when optimizing imports
icons_rc = icons_rc
# icons_rc = icons_rc
def getDataType(parent):