.idea/inspectionProfiles/profiles_settings.xml

@@ -0,0 +1,6 @@
+<component name="InspectionProjectProfileManager">
+  <settings>
+    <option name="USE_PROJECT_PROFILE" value="false" />
+    <version value="1.0" />
+  </settings>
+</component>

.idea/misc.xml

@@ -0,0 +1,4 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.9 (pylot)" project-jdk-type="Python SDK" />
+</project>

.idea/modules.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/pylot.iml" filepath="$PROJECT_DIR$/.idea/pylot.iml" />
+    </modules>
+  </component>
+</project>

.idea/pylot.iml

@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="PYTHON_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <content url="file://$MODULE_DIR$" />
+    <orderEntry type="jdk" jdkName="Python 3.9 (pylot)" jdkType="Python SDK" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+  <component name="PyDocumentationSettings">
+    <option name="format" value="PLAIN" />
+    <option name="myDocStringFormat" value="Plain" />
+  </component>
+</module>

.idea/vcs.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="$PROJECT_DIR$" vcs="Git" />
+  </component>
+</project>

PyLoT.py

@@ -35,18 +35,17 @@ import traceback
 import json
 from datetime import datetime
 
-matplotlib.use('Qt4Agg')
-matplotlib.rcParams['backend.qt4'] = 'PySide'
+matplotlib.use('Qt5Agg')
 matplotlib.rcParams['savefig.dpi'] = 300
 
-
-from PySide import QtGui, QtCore
-from PySide.QtCore import QCoreApplication, QSettings, Signal, QFile, \
+from PySide2 import QtGui, QtCore, QtWidgets
+from PySide2.QtCore import QCoreApplication, QSettings, Signal, QFile, \
     QFileInfo, Qt, QSize
-from PySide.QtGui import QMainWindow, QInputDialog, QIcon, QFileDialog, \
-    QWidget, QHBoxLayout, QVBoxLayout, QStyle, QKeySequence, QLabel, QFrame, QAction, \
-    QDialog, QApplication, QPixmap, QMessageBox, QSplashScreen, \
-    QActionGroup, QListWidget, QListView, QAbstractItemView, \
+from PySide2.QtGui import QIcon, QKeySequence, QPixmap
+from PySide2.QtWidgets import QMainWindow, QInputDialog, QFileDialog, \
+    QWidget, QHBoxLayout, QVBoxLayout, QStyle, QLabel, QFrame, QAction, \
+    QDialog, QErrorMessage, QApplication, QMessageBox, QSplashScreen, \
+    QActionGroup, QListWidget, QLineEdit, QListView, QAbstractItemView, \
     QTreeView, QComboBox, QTabWidget, QPushButton, QGridLayout
 import numpy as np
 from obspy import UTCDateTime, Stream
@@ -58,9 +57,10 @@ from pylot.core.util.obspyDMT_interface import check_obspydmt_structure
 import pyqtgraph as pg
 
 try:
-    from matplotlib.backends.backend_qt4agg import FigureCanvas
+    from matplotlib.backends.backend_qt5agg import FigureCanvas
 except ImportError:
-    from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
+    from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
+from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
 from matplotlib.figure import Figure
 
 from pylot.core.analysis.magnitude import LocalMagnitude, MomentMagnitude
@@ -87,7 +87,7 @@ from pylot.core.util.widgets import FilterOptionsDialog, NewEventDlg, \
     PylotCanvas, WaveformWidgetPG, PropertiesDlg, HelpForm, createAction, PickDlg, \
     ComparisonWidget, TuneAutopicker, PylotParaBox, AutoPickDlg, CanvasWidget, AutoPickWidget, \
     CompareEventsWidget, ProgressBarWidget, AddMetadataWidget, SingleTextLineDialog
-from pylot.core.util.array_map import Array_map
+#from pylot.core.util.array_map import Array_map
 from pylot.core.util.structure import DATASTRUCTURE
 from pylot.core.util.thread import Thread, Worker
 from pylot.core.util.version import get_git_version as _getVersionString
@@ -581,7 +581,6 @@ class MainWindow(QMainWindow):
         self.autoPickMenu = self.pickMenu.addMenu(self.autopicksicon_small, 'Automatic picking')
         self.autoPickMenu.setEnabled(False)
 
-
         autoPickActions = (self.auto_pick, self.auto_pick_local, self.auto_pick_sge)
 
         self.helpMenu = self.menuBar().addMenu('&Help')
@@ -714,7 +713,6 @@ class MainWindow(QMainWindow):
 
         self.setCentralWidget(_widget)
 
-
     def init_wfWidget(self):
         xlab = self.startTime.strftime('seconds since %Y/%m/%d %H:%M:%S (%Z)')
         plottitle = None  # "Overview: {0} components ".format(self.getComponent())
@@ -760,7 +758,6 @@ class MainWindow(QMainWindow):
         if event.key() == QtCore.Qt.Key.Key_R:
             self.reset_gain()
 
-
     def keyReleaseEvent(self, event):
         if event.key() == QtCore.Qt.Key.Key_Control:
             self._ctrl = False
@@ -932,7 +929,6 @@ class MainWindow(QMainWindow):
 
             self.recentProjectsMenu.addAction(action)
 
-
     @property
     def inputs(self):
         return self._inputs
@@ -1151,7 +1147,8 @@ class MainWindow(QMainWindow):
             eventlist_file = os.path.join(basepath, 'eventlist.txt')
             if os.path.isfile(eventlist_file):
                 with open(eventlist_file, 'r') as infile:
-                    eventlist_subset = [os.path.join(basepath, filename.split('\n')[0]) for filename in infile.readlines()]
+                    eventlist_subset = [os.path.join(basepath, filename.split('\n')[0]) for filename in
+                                        infile.readlines()]
                     msg = 'Found file "eventlist.txt" in database path. WILL ONLY USE SELECTED EVENTS out of {} events ' \
                           'contained in this subset'
                     print(msg.format(len(eventlist_subset)))
@@ -1505,6 +1502,7 @@ class MainWindow(QMainWindow):
             event = self.get_current_event()
         if not type(outformats) == list:
             outformats = [outformats]
+
         def getSavePath(event, directory, outformats):
             if not directory:
                 title = 'Save event data as {} to directory ...'.format(outformats)
@@ -2870,7 +2868,6 @@ class MainWindow(QMainWindow):
         else:
             event.addAutopicks(picksdict['auto'])
 
-
     def drawPicks(self, station=None, picktype=None, stime=None):
         # if picktype not specified, draw both
         if not stime:
@@ -3392,7 +3389,6 @@ class MainWindow(QMainWindow):
         if event == current_event:
             set_background_color(item_list, QtGui.QColor(*(0, 143, 143, 255)))
 
-
     def set_metadata(self):
         self.project.inventories = self.metadata.inventories
         if self.metadata.inventories:
@@ -3697,7 +3693,6 @@ class MainWindow(QMainWindow):
         self.plotWaveformDataThread()
         self.refreshTabs()
 
-
     def PyLoTprefs(self):
         if not self._props:
             self._props = PropertiesDlg(self, infile=self.infile,

icons.qrc

@@ -29,7 +29,6 @@
         <file>icons/map.png</file>
         <file>icons/openloc.png</file>
         <file>icons/compare_button.png</file>
-        <file>icons/pick_qualities_button.png</file>
         <file>icons/locate_button.png</file>
         <file>icons/Matlab_PILOT_icon.png</file>
         <file>icons/printer.png</file>

pylot/core/io/data.py

@@ -8,7 +8,7 @@ from obspy.core import read, Stream, UTCDateTime
 from obspy.core.event import Event as ObsPyEvent
 from obspy.io.sac import SacIOError
 
-from PySide.QtGui import QMessageBox
+from PySide2.QtWidgets import QMessageBox
 
 import pylot.core.loc.velest as velest
 import pylot.core.loc.focmec as focmec
@@ -21,6 +21,7 @@ from pylot.core.util.obspyDMT_interface import qml_from_obspyDMT
 from pylot.core.util.utils import fnConstructor, full_range, check4rotated, \
     check4gapsAndMerge, trim_station_components
 
+
 class Data(object):
     """
     Data container with attributes wfdata holding ~obspy.core.stream.
@@ -47,7 +48,7 @@ class Data(object):
         elif isinstance(evtdata, dict):
             evt = readPILOTEvent(**evtdata)
             evtdata = evt
-        elif type(evtdata) in [str, unicode]:
+        elif type(evtdata) == str:
             try:
                 cat = read_events(evtdata)
                 if len(cat) is not 1:
@@ -288,6 +289,7 @@ class Data(object):
                 self.checkEvent(event, fcheck)
                 self.setEvtData(event)
 
+
             self.get_evt_data().write(fnout + fnext, format=evtformat)
 
         # try exporting event
@@ -489,7 +491,8 @@ class Data(object):
                     real_or_syn_data[synthetic] += read(fname, format='GSE2', starttime=self.tstart, endtime=self.tstop)
                 except Exception as e:
                     try:
-                        real_or_syn_data[synthetic] += read(fname, format='SEGY', starttime=self.tstart, endtime=self.tstop)
+                        real_or_syn_data[synthetic] += read(fname, format='SEGY', starttime=self.tstart,
+                                                            endtime=self.tstop)
                     except Exception as e:
                         warnmsg += '{0}\n{1}\n'.format(fname, e)
             except SacIOError as se:

pylot/core/util/array_map.py

@@ -6,7 +6,8 @@ import matplotlib.pyplot as plt
 import numpy as np
 import obspy
 import traceback
-from PySide import QtGui
+#from PySide2 import QtGui
+from PySide2 import QtWidgets as QtGui
 from matplotlib.figure import Figure
 from mpl_toolkits.axes_grid1.inset_locator import inset_axes
 from mpl_toolkits.basemap import Basemap

pylot/core/util/thread.py

@@ -4,8 +4,8 @@ import os
 import sys
 import traceback
 
-from PySide.QtCore import QThread, Signal, Qt, Slot, QRunnable, QObject
-from PySide.QtGui import QDialog, QProgressBar, QLabel, QHBoxLayout
+from PySide2.QtCore import QThread, Signal, Qt, Slot, QRunnable, QObject
+from PySide2.QtWidgets import QDialog, QProgressBar, QLabel, QHBoxLayout
 
 
 class Thread(QThread):

pylot/core/util/widgets.py

@@ -17,27 +17,28 @@ import sys
 import time
 import traceback
 
-matplotlib.use('QT4Agg')
+matplotlib.use('QT5Agg')
 
 from matplotlib.figure import Figure
 
 try:
-    from matplotlib.backends.backend_qt4agg import FigureCanvas
+    from matplotlib.backends.backend_qt5agg import FigureCanvas
 except ImportError:
-    from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
-from matplotlib.backends.backend_qt4agg import NavigationToolbar2QT
+    from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
+from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT
 from matplotlib.widgets import MultiCursor
 from obspy import read
 
-from PySide import QtCore, QtGui
-from PySide.QtGui import QAction, QApplication, QCheckBox, QComboBox, \
+from PySide2 import QtCore, QtGui
+from PySide2.QtGui import QIcon, QPixmap, QKeySequence
+from PySide2.QtWidgets import QAction, QApplication, QCheckBox, QComboBox, \
     QDateTimeEdit, QDialog, QDialogButtonBox, QDoubleSpinBox, QGroupBox, \
-    QGridLayout, QFormLayout, QIcon, QLabel, QLineEdit, QMessageBox, \
-    QPixmap, QSpinBox, QTabWidget, QToolBar, QVBoxLayout, QHBoxLayout, QWidget, \
-    QPushButton, QFileDialog, QInputDialog, QKeySequence
-from PySide.QtCore import QSettings, Qt, QUrl, Signal
-from PySide.QtWebKit import QWebView
-from obspy import Stream, Trace, UTCDateTime
+    QGridLayout, QFormLayout, QLabel, QLineEdit, QMessageBox, \
+    QSpinBox, QTabWidget, QToolBar, QVBoxLayout, QHBoxLayout, QWidget, \
+    QPushButton, QFileDialog, QInputDialog
+from PySide2.QtCore import QSettings, Qt, QUrl, Signal, Slot
+from PySide2.QtWebEngineWidgets import QWebEngineView as QWebView
+from obspy import Stream, UTCDateTime
 from obspy.core.util import AttribDict
 from obspy.taup import TauPyModel
 from obspy.taup.utils import get_phase_names