232 lines
10 KiB
Python
Executable File
232 lines
10 KiB
Python
Executable File
#!/usr/bin/python
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# -*- coding: utf-8 -*-
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import os
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import argparse
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import glob
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import subprocess
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import string
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from obspy.core import read
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from pylot.core.read.data import Data
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from pylot.core.read.inputs import AutoPickParameter
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from pylot.core.util.structure import DATASTRUCTURE
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from pylot.core.pick.autopick import autopickevent
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from pylot.core.loc.nll import *
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from pylot.core.util.version import get_git_version as _getVersionString
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__version__ = _getVersionString()
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def autoPyLoT(inputfile):
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"""
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Determine phase onsets automatically utilizing the automatic picking
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algorithms by Kueperkoch et al. 2010/2012.
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:param inputfile: path to the input file containing all parameter
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information for automatic picking (for formatting details, see.
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`~pylot.core.read.input.AutoPickParameter`
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:type inputfile: str
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:return:
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.. rubric:: Example
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"""
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splash = '''************************************\n
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*********autoPyLoT starting*********\n
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The Python picking and Location Tool\n
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Version {version} 2015\n
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\n
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Authors:\n
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S. Wehling-Benatelli (Ruhr-Universität Bochum)\n
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L. Küperkoch (BESTEC GmbH, Landau i. d. Pfalz)\n
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K. Olbert (Christian-Albrechts Universität zu Kiel)\n
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***********************************'''.format(version=_getVersionString())
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print(splash)
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# reading parameter file
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parameter = AutoPickParameter(inputfile)
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data = Data()
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# getting information on data structure
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if parameter.hasParam('datastructure'):
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datastructure = DATASTRUCTURE[parameter.getParam('datastructure')]()
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dsfields = {'root' :parameter.getParam('rootpath'),
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'dpath' :parameter.getParam('datapath'),
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'dbase' :parameter.getParam('database')}
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exf = ['root', 'dpath', 'dbase']
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if parameter.hasParam('eventID'):
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dsfields['eventID'] = parameter.getParam('eventID')
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exf.append('eventID')
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datastructure.modifyFields(**dsfields)
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datastructure.setExpandFields(exf)
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# check if default location routine NLLoc is available
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if parameter.hasParam('nllocbin'):
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locflag = 1
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# get NLLoc-root path
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nllocroot = parameter.getParam('nllocroot')
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# get path to NLLoc executable
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nllocbin = parameter.getParam('nllocbin')
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nlloccall = '%s/NLLoc' % nllocbin
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# get name of phase file
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phasef = parameter.getParam('phasefile')
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phasefile = '%s/obs/%s' % (nllocroot, phasef)
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# get name of NLLoc-control file
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locf = parameter.getParam('locfile')
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locfile = '%s/run/%s' % (nllocroot, locf)
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# patter of NLLoc ttimes from location grid
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ttpat = parameter.getParam('ttpatter')
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ttpatter = '%s/time/%s' % (nllocroot, ttpat)
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# patter of NLLoc-output file
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nllocoutpatter = parameter.getParam('outpatter')
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else:
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locflag = 0
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print (" !!! ")
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print ("!!No location routine available, autoPyLoT is running in non-location mode!!")
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print (" !!! ")
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# multiple event processing
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# read each event in database
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datapath = datastructure.expandDataPath()
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if not parameter.hasParam('eventID'):
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for event in [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)]:
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data.setWFData(glob.glob(os.path.join(datapath, event, '*')))
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print('Working on event %s' % event)
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print(data)
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wfdat = data.getWFData() # all available streams
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##########################################################
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# !automated picking starts here!
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picks = autopickevent(wfdat, parameter)
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##########################################################
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# locating
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if locflag == 1:
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# write phases to NLLoc-phase file
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picksExport(picks, 'NLLoc', phasefile)
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# For locating the event the NLLoc-control file has to be modified!
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# create comment line for NLLoc-control file
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# NLLoc-output file
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evID = event[string.rfind(event, "/") + 1 : len(events) - 1]
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nllocout = '%s/loc/%s_%s' % (nllocroot, evID, nllocoutpatter)
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locfiles = 'LOCFILES %s NLLOC_OBS %s %s 0' % (phasefile, ttpatter, nllocout)
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print ("Modifying NLLoc-control file %s ..." % locfile)
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# modification of NLLoc-control file
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filedata = None
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nllfile = open(locfile, 'r')
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filedata = nllfile.read()
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if filedata.find(locfiles) < 0:
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# replace old command
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filedata = filedata.replace('LOCFILES', locfiles)
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nllfile = open(locfile, 'w')
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nllfile.write(filedata)
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nllfile.close()
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# locate the event
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subprocess.call([nlloccall, locfile])
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# !iterative picking if traces remained unpicked or with bad picks!
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# get theoretical onset times for picks with weights >= 4
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# in order to reprocess them using smaller time windows
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##########################################################
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# write phase files for various location routines
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# HYPO71
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hypo71file = '%s/%s/autoPyLoT_HYPO71.pha' % (datapath, evID)
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writephases(picks, 'HYPO71', hypo71file)
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endsplash = '''------------------------------------------\n'
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-----Finished event %s!-----\n'
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------------------------------------------'''.format \
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(version=_getVersionString()) % evID
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print(endsplash)
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if locflag == 0:
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print("autoPyLoT was running in non-location mode!")
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# single event processing
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else:
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data.setWFData(glob.glob(os.path.join(datapath, parameter.getParam('eventID'), '*')))
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print("Working on event "), parameter.getParam('eventID')
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print data
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wfdat = data.getWFData() # all available streams
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##########################################################
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# !automated picking starts here!
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picks = autopickevent(wfdat, parameter)
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##########################################################
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# locating
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if locflag == 1:
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# write phases to NLLoc-phase file
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picksExport(picks, 'NLLoc', phasefile)
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# For locating the event the NLLoc-control file has to be modified!
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# create comment line for NLLoc-control file NLLoc-output file
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nllocout = '%s/loc/%s_%s' % (nllocroot, parameter.getParam('eventID'), nllocoutpatter)
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locfiles = 'LOCFILES %s NLLOC_OBS %s %s 0' % (phasefile, ttpatter, nllocout)
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print ("Modifying NLLoc-control file %s ..." % locfile)
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# modification of NLLoc-control file
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filedata = None
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nllfile = open(locfile, 'r')
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filedata = nllfile.read()
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if filedata.find(locfiles) < 0:
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# replace old command
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filedata = filedata.replace('LOCFILES', locfiles)
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nllfile = open(locfile, 'w')
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nllfile.write(filedata)
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nllfile.close()
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# locate the event
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subprocess.call([nlloccall, locfile])
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# !iterative picking if traces remained unpicked or with bad picks!
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# get theoretical onset times for picks with weights >= 4
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# in order to reprocess them using smaller time windows
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##########################################################
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# write phase files for various location routines
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# HYPO71
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hypo71file = '%s/%s/autoPyLoT_HYPO71.pha' % (datapath, parameter.getParam('eventID'))
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writephases(picks, 'HYPO71', hypo71file)
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endsplash = '''------------------------------------------\n'
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-----Finished event %s!-----\n'
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------------------------------------------'''.format \
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(version=_getVersionString()) % parameter.getParam('eventID')
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print(endsplash)
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if locflag == 0:
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print("autoPyLoT was running in non-location mode!")
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endsp = '''####################################\n
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************************************\n
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*********autoPyLoT terminates*******\n
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The Python picking and Location Tool\n
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************************************'''.format(version=_getVersionString())
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print(endsp)
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if __name__ == "__main__":
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# parse arguments
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parser = argparse.ArgumentParser(
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description='''autoPyLoT automatically picks phase onset times using higher order statistics,
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autoregressive prediction and AIC''')
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parser.add_argument('-i', '-I', '--inputfile', type=str,
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action='store',
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help='''full path to the file containing the input
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parameters for autoPyLoT''',
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default=os.path.join(os.path.expanduser('~'), '.pylot',
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'autoPyLoT.in')
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)
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parser.add_argument('-v', '-V', '--version', action='version',
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version='autoPyLoT ' + __version__,
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help='show version information and exit')
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cla = parser.parse_args()
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autoPyLoT(str(cla.inputfile))
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