pylot/QtPyLoT.py

739 lines
29 KiB
Python
Executable File

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
PyLoT: Main program
===================
PyLoT is a seismic data processing software capable of picking seismic
phases (symmetric and asymmetric error assignment), exporting these to
several common phase data formats and post process the data, e.g. locating
events, via external localization software.
Additionally PyLoT is meant as an interface to autoPyLoT which can
automatically pick seismic phases, if the parameters have properly been
chosen for the particular data set.
Some icons are out of a free of charge icon set, which can be found here:
https://www.iconfinder.com/iconsets/flavour
:author:
Sebastian Wehling-Benatelli
:copyright:
The PyLoT Development Team (https://ariadne.geophysik.rub.de/trac/PyLoT)
:license:
GNU Lesser General Public License, Version 3
(http://www.gnu.org/copyleft/lesser.html)
"""
import sys
import matplotlib
matplotlib.use('Qt4Agg')
matplotlib.rcParams['backend.qt4'] = 'PySide'
from PySide.QtCore import QCoreApplication, QSettings, Signal, QFile, \
QFileInfo, Qt
from PySide.QtGui import QMainWindow, QInputDialog, QIcon, QFileDialog, \
QWidget, QHBoxLayout, QStyle, QKeySequence, QLabel, QFrame, QAction, \
QDialog, QErrorMessage, QApplication, QPixmap, QMessageBox, QSplashScreen, \
QActionGroup, QListWidget
import numpy as np
from obspy.core import UTCDateTime
from pylot.core.read import Data, FilterOptions, AutoPickParameter
from pylot.core.util import _getVersionString, FILTERDEFAULTS, fnConstructor, \
checkurl, FormatError, FilterOptionsDialog, \
NewEventDlg, createEvent, MPLWidget, PropertiesDlg, HelpForm, \
DatastructureError, createAction, getLogin, createCreationInfo, PickDlg
from pylot.core.util.thread import WorkerThread
from pylot.core.util.structure import DATASTRUCTURE
import icons_rc
# Version information
__version__ = _getVersionString()
class MainWindow(QMainWindow):
closing = Signal()
def __init__(self, parent=None):
super(MainWindow, self).__init__(parent)
self.createAction = createAction
self.dirty = False
settings = QSettings()
if settings.value("user/FullName", None) is None:
fulluser = QInputDialog.getText(self, "Enter Name:", "Full name")
settings.setValue("user/FullName", fulluser)
settings.setValue("user/Login", getLogin())
if settings.value("agency_id", None) is None:
agency = QInputDialog.getText(self,
"Enter authority name (e.g. BUG):",
"Authority")
settings.setValue("agency_id", agency)
self.recentEvents = settings.value("data/recentEvents", [])
self.fnames = None
structure_setting = settings.value("data/Structure", "PILOT")
self.dataStructure = DATASTRUCTURE[structure_setting]()
self.seismicPhase = str(settings.value("phase", "P"))
self.dispComponent = str(settings.value("plotting/dispComponent", "Z"))
if settings.value("data/dataRoot", None) is None:
dirname = QFileDialog().getExistingDirectory(
caption='Choose data root ...')
settings.setValue("data/dataRoot", dirname)
settings.sync()
self.filteroptions = {}
self.pickDlgs = {}
self.picks = {}
# UI has to be set up before(!) children widgets are about to show up
self.setupUi()
# initialize event data
if self.recentEvents:
lastEvent = self.getLastEvent()
self.data = Data(self, lastEvent)
else:
self.data = Data(self)
# load and display waveform data
self.loadWaveformData()
self.dirty = False
self.loadData()
self.updateFilterOptions()
def setupUi(self):
try:
self.startTime = min(
[tr.stats.starttime for tr in self.data.wfdata])
except:
self.startTime = UTCDateTime()
pylot_icon = QIcon()
pylot_icon.addPixmap(QPixmap(':/icons/pylot.png'))
self.setWindowTitle("PyLoT - do seismic processing the python way")
self.setWindowIcon(pylot_icon)
xlab = self.startTime.strftime('seconds since %Y/%m/%d %H:%M:%S (%Z)')
_widget = QWidget()
_widget.setCursor(Qt.CrossCursor)
_layout = QHBoxLayout()
plottitle = "Overview: {0} components ".format(self.getComponent())
# create central matplotlib figure canvas widget
self.DataPlot = MPLWidget(parent=self, xlabel=xlab, ylabel=None,
title=plottitle)
self.DataPlot.mpl_connect('button_press_event',
self.pickOnStation)
self.DataPlot.mpl_connect('axes_enter_event',
lambda event: self.tutorUser())
_layout.addWidget(self.DataPlot)
openIcon = self.style().standardIcon(QStyle.SP_DirOpenIcon)
quitIcon = self.style().standardIcon(QStyle.SP_MediaStop)
saveIcon = self.style().standardIcon(QStyle.SP_DriveHDIcon)
helpIcon = self.style().standardIcon(QStyle.SP_DialogHelpButton)
newIcon = self.style().standardIcon(QStyle.SP_FileIcon)
# create resource icons
p_icon = QIcon()
p_icon.addPixmap(QPixmap(':/icons/key_P.png'))
s_icon = QIcon()
s_icon.addPixmap(QPixmap(':/icons/key_S.png'))
print_icon = QIcon()
print_icon.addPixmap(QPixmap(':/icons/printer.png'))
filter_icon = QIcon()
filter_icon.addPixmap(QPixmap(':/icons/filter.png'))
z_icon = QIcon()
z_icon.addPixmap(QPixmap(':/icons/key_Z.png'))
n_icon = QIcon()
n_icon.addPixmap(QPixmap(':/icons/key_N.png'))
e_icon = QIcon()
e_icon.addPixmap(QPixmap(':/icons/key_E.png'))
auto_icon = QIcon()
auto_icon.addPixmap(QPixmap(':/icons/sync.png'))
newEventAction = self.createAction(self, "&New event ...",
self.createNewEvent,
QKeySequence.New, newIcon,
"Create a new event.")
openEventAction = self.createAction(self, "&Open event ...",
self.loadData, QKeySequence.Open,
openIcon, "Open an event.")
openEventAction.setData(None)
saveEventAction = self.createAction(self, "&Save event ...",
self.saveData, QKeySequence.Save,
saveIcon, "Save actual event data.")
openWFDataAction = self.createAction(self, "Open &waveforms ...",
self.loadWaveformData,
"Ctrl+W", QIcon(":/wfIcon.png"),
"""Open waveform data (event will
be closed).""")
prefsEventAction = self.createAction(self, "Preferences",
self.PyLoTprefs,
QKeySequence.Preferences,
QIcon(None),
"Edit PyLoT app preferences.")
quitAction = self.createAction(self, "&Quit",
QCoreApplication.instance().quit,
QKeySequence.Close, quitIcon,
"Close event and quit PyLoT")
self.filterAction = self.createAction(self, "&Filter ...",
self.filterWaveformData,
"Ctrl+F", filter_icon,
"""Toggle un-/filtered waveforms
to be displayed, according to the
desired seismic phase.""", True)
filterEditAction = self.createAction(self, "&Filter parameter ...",
self.adjustFilterOptions,
"Alt+F", QIcon(None),
"""Adjust filter parameters.""")
self.selectPAction = self.createAction(self, "&P", self.alterPhase,
"Alt+P",
p_icon,
"Toggle P phase.", True)
self.selectSAction = self.createAction(self, "&S", self.alterPhase,
"Alt+S",
s_icon,
"Toggle S phase", True)
printAction = self.createAction(self, "&Print event ...",
self.printEvent, QKeySequence.Print,
print_icon,
"Print waveform overview.")
helpAction = self.createAction(self, "&Help ...", self.helpHelp,
QKeySequence.HelpContents, helpIcon,
"""Show either the documentation
homepage (internet connection available),
or shipped documentation files.""")
self.fileMenu = self.menuBar().addMenu('&File')
self.fileMenuActions = (newEventAction, openEventAction,
saveEventAction, openWFDataAction, None,
prefsEventAction, quitAction)
self.fileMenu.aboutToShow.connect(self.updateFileMenu)
self.updateFileMenu()
self.editMenu = self.menuBar().addMenu('&Edit')
editActions = (self.filterAction, filterEditAction, None,
self.selectPAction, self.selectSAction, None,
printAction)
self.addActions(self.editMenu, editActions)
self.helpMenu = self.menuBar().addMenu('&Help')
helpActions = (helpAction,)
self.addActions(self.helpMenu, helpActions)
fileToolBar = self.addToolBar("FileTools")
fileToolActions = (newEventAction, openEventAction, saveEventAction)
fileToolBar.setObjectName("FileTools")
self.addActions(fileToolBar, fileToolActions)
phaseToolBar = self.addToolBar("PhaseTools")
phaseToolActions = (self.selectPAction, self.selectSAction)
phaseToolBar.setObjectName("PhaseTools")
self.addActions(phaseToolBar, phaseToolActions)
# create button group for component selection
componentGroup = QActionGroup(self)
componentGroup.setExclusive(True)
z_action = self.createAction(parent=componentGroup, text='Z',
slot=self.plotZ, shortcut='Alt+Z',
icon=z_icon, tip='Display the vertical (Z)'
' component.',
checkable=True)
z_action.setChecked(True)
n_action = self.createAction(parent=componentGroup, text='N',
slot=self.plotN, shortcut='Alt+N',
icon=n_icon,
tip='Display the north-south (N) '
'component.', checkable=True)
e_action = self.createAction(parent=componentGroup, text='E',
slot=self.plotE, shortcut='Alt+E',
icon=e_icon,
tip='Display the east-west (E) component.',
checkable=True)
componentToolBar = self.addToolBar("ComponentSelection")
componentActions = (z_action, n_action, e_action)
componentToolBar.setObjectName("PhaseTools")
self.addActions(componentToolBar, componentActions)
auto_pick = self.createAction(parent=self, text='autoPick',
slot=self.autoPick, shortcut='Alt+Ctrl+A',
icon=auto_icon, tip='Automatically pick'
' the entire dataset'
' displayed!',
checkable=False)
autoPickToolBar = self.addToolBar("autoPyLoT")
autoPickActions = (auto_pick,)
self.addActions(autoPickToolBar, autoPickActions)
# pickToolBar = self.addToolBar("PickTools")
# pickToolActions = (selectStation, )
# pickToolBar.setObjectName("PickTools")
# self.addActions(pickToolBar, pickToolActions)
self.eventLabel = QLabel()
self.eventLabel.setFrameStyle(QFrame.StyledPanel | QFrame.Sunken)
status = self.statusBar()
status.setSizeGripEnabled(False)
status.addPermanentWidget(self.eventLabel)
status.showMessage("Ready", 500)
_widget.setLayout(_layout)
_widget.showFullScreen()
self.setCentralWidget(_widget)
def updateFileMenu(self):
self.fileMenu.clear()
for action in self.fileMenuActions[:-1]:
if action is None:
self.fileMenu.addSeparator()
else:
self.fileMenu.addAction(action)
try:
current = self.data.getID()
except AttributeError:
current = None
recentEvents = []
for eventID in self.recentEvents:
fname = fnConstructor(eventID)
if eventID != current and QFile.exists(fname):
recentEvents.append(eventID)
recentEvents.reverse()
self.recentEvents = recentEvents[0:5]
settings = QSettings()
settings.setValue()
if recentEvents:
for i, eventID in enumerate(recentEvents):
fname = fnConstructor(eventID)
action = QAction(self.windowIcon(),
"&{0} {1}".format(i + 1,
QFileInfo(fname).fileName()),
self)
action.setData(fname)
self.connect(action, Signal("triggered()"),
self.loadData)
self.fileMenu.addAction(action)
self.fileMenu.addSeparator()
self.fileMenu.addAction(self.fileMenuActions[-1])
def loadData(self, fname=None):
if fname is None:
try:
self.data = Data(self, evtdata=self.fname)
except AttributeError:
action = self.sender()
if isinstance(action, QAction):
if action.data() is None:
filt = "Supported event formats (*.mat *.qml *.xml *.kor *.evt)"
caption = "Open an event file"
fname = QFileDialog().getOpenFileName(self,
caption=caption,
filter=filt)
self.fname = fname[0]
else:
self.fname = unicode(action.data().toString())
if not self.okToContinue():
return
else:
self.fname = fname
self.data = Data(self, evtdata=self.fname)
def getLastEvent(self):
return self.recentEvents[0]
def getWFFnames(self):
try:
evt = self.getData().getEvtData()
if evt.picks:
for pick in evt.picks:
try:
if pick.waveform_id is not None:
fname = pick.waveform_id.getSEEDstring()
if fname not in self.fnames:
self.fnames.append(fname)
except:
continue
else:
if self.dataStructure:
searchPath = self.dataStructure.expandDataPath()
fnames = QFileDialog.getOpenFileNames(self,
"Select waveform "
"files:",
dir=searchPath)
self.fnames = fnames[0]
else:
raise DatastructureError('not specified')
return self.fnames
except DatastructureError, e:
print e
props = PropertiesDlg(self)
if props.exec_() == QDialog.Accepted:
return self.getWFFnames()
else:
return
def saveData(self):
settings = QSettings()
exform = settings.value('data/exportFormat', 'QUAKEML')
try:
self.data.exportEvent(self.fname, exform)
except FormatError:
return False
except AttributeError, e:
print 'warning: {0}'.format(e)
fname = QFileDialog.getSaveFileName(self, 'Save event')
fname = fname[0]
self.getData().exportEvent(fname, exform)
return True
def getComponent(self):
return self.dispComponent
def setComponent(self, component):
self.dispComponent = component
def getData(self):
return self.data
def getPicks(self):
return self.picks
def getPicksOnStation(self, station):
try:
return self.getPicks()[station]
except KeyError:
return None
def getPlotWidget(self):
return self.DataPlot
@staticmethod
def getWFID(gui_event):
ycoord = gui_event.ydata
statID = int(round(ycoord))
return statID
def getStationID(self, station):
for wfID in self.getPlotWidget().getPlotDict().keys():
actual_station = self.getPlotWidget().getPlotDict()[wfID][0]
if station == actual_station:
return wfID
return None
def addActions(self, target, actions):
for action in actions:
if action is None:
target.addSeparator()
else:
target.addAction(action)
def okToContinue(self):
if self.dirty:
return self.saveData()
return True
def loadWaveformData(self):
if self.fnames and self.okToContinue():
self.dirty = True
self.data.setWFData(self.fnames)
elif self.fnames is None and self.okToContinue():
self.data.setWFData(self.getWFFnames())
self.plotWaveformData()
def plotWaveformData(self):
zne_text = {'Z': 'vertical', 'N': 'north-south', 'E': 'east-west'}
comp = self.getComponent()
title = 'overview: {0} components'.format(zne_text[comp])
wfst = self.getData().getWFData().select(component=comp)
self.getPlotWidget().plotWFData(wfdata=wfst, title=title)
self.draw()
pos = self.getPlotWidget().getPlotDict().keys()
labels = [int(act) for act in pos]
self.getPlotWidget().setYTickLabels(pos, labels)
def plotZ(self):
self.setComponent('Z')
self.plotWaveformData()
self.drawPicks()
def plotN(self):
self.setComponent('N')
self.plotWaveformData()
self.drawPicks()
def plotE(self):
self.setComponent('E')
self.plotWaveformData()
self.drawPicks()
def filterWaveformData(self):
if self.getData():
def hasfreq(kwdict):
for key in kwdict.keys():
if not key.startswith('freq'):
return True
return False
if self.filterAction.isChecked():
kwargs = {}
freq = self.getFilterOptions().getFreq()
if freq is not None and len(freq) > 1:
kwargs['freqmin'] = freq[0]
kwargs['freqmax'] = freq[1]
elif freq is not None and len(freq) == 1:
kwargs['freq'] = freq
if hasfreq(kwargs):
kwargs['type'] = self.getFilterOptions().getFilterType()
kwargs['corners'] = self.getFilterOptions().getOrder()
self.getData().filterWFData(kwargs)
else:
self.getData().resetWFData()
self.plotWaveformData()
def adjustFilterOptions(self):
filteroptions = self.getFilterOptions()
fstring = "Filter Options ({0})".format(self.getSeismicPhase())
filterDlg = FilterOptionsDialog(titleString=fstring,
parent=self,
filterOptions=filteroptions)
if filterDlg.exec_():
filteroptions = filterDlg.getFilterOptions()
self.setFilterOptions(filteroptions)
def getFilterOptions(self):
try:
return self.filteroptions[self.getSeismicPhase()]
except AttributeError, e:
print e
return FilterOptions(None, None, None)
def getFilters(self):
return self.filteroptions
def setFilterOptions(self, filterOptions, seismicPhase=None):
if seismicPhase is None:
self.getFilters()[self.getSeismicPhase()] = filterOptions
else:
self.getFilters()[seismicPhase] = filterOptions
def updateFilterOptions(self):
try:
settings = QSettings()
if settings.value("filterdefaults",
None) is None and not self.getFilters():
for key, value in FILTERDEFAULTS.iteritems():
self.setFilterOptions(FilterOptions(**value), key)
elif settings.value("filterdefaults", None) is not None:
for key, value in settings.value("filterdefaults"):
self.setFilterOptions(FilterOptions(**value), key)
except Exception, e:
self.updateStatus('Error ...')
emsg = QErrorMessage(self)
emsg.showMessage('Error: {0}'.format(e))
else:
self.updateStatus('Filter loaded ... '
'[{0}: {1} Hz]'.format(
self.getFilterOptions().getFilterType(),
self.getFilterOptions().getFreq()))
if self.filterAction.isChecked():
self.filterWaveformData()
def getSeismicPhase(self):
return self.seismicPhase
def getStationName(self, wfID):
return self.getPlotWidget().getPlotDict()[wfID][0]
def alterPhase(self):
pass
def setSeismicPhase(self, phase):
self.seismicPhase = self.seismicPhaseButtonGroup.getValue()
self.updateStatus('Seismic phase changed to '
'{0}'.format(self.getSeismicPhase()))
def pickOnStation(self, gui_event):
wfID = self.getWFID(gui_event)
station = self.getStationName(wfID)
self.updateStatus('picking on station {0}'.format(station))
data = self.getData().getWFData()
pickDlg = PickDlg(self, data=data.select(station=station),
station=station,
picks=self.getPicksOnStation(station))
if pickDlg.exec_():
self.updateStatus('picks accepted ({0})'.format(station))
self.addPicks(station, pickDlg.getPicks())
self.drawPicks(station)
else:
self.updateStatus('picks discarded ({0})'.format(station))
def autoPick(self):
list = QListWidget()
autopick_parameter = AutoPickParameter('autoPyLoT_local.in')
list.addItem(str(autopick_parameter))
# Create the worker thread and run it
self.thread = WorkerThread(parent=self,
func=autopickevent,
data=self.getData().getWFData(),
param=autopick_parameter)
self.thread.message.connect(list.addItem)
self.thread.start()
def addPicks(self, station, picks):
stat_picks = self.getPicksOnStation(station)
if not stat_picks:
stat_picks = picks
else:
msgBox = QMessageBox()
msgBox.setText("The picks for station {0} have been "
"changed.".format(station))
msgBox.setDetailedText("Old picks:\n"
"{old_picks}\n\n"
"New picks:\n"
"{new_picks}".format(old_picks=stat_picks,
new_picks=picks))
msgBox.setInformativeText("Do you want to save your changes?")
msgBox.setStandardButtons(QMessageBox.Save | QMessageBox.Cancel)
msgBox.setDefaultButton(QMessageBox.Save)
ret = msgBox.exec_()
if ret == QMessageBox.Save:
stat_picks = picks
elif ret == QMessageBox.Cancel:
pass
else:
raise Exception('FATAL: Should never occur!')
self.getPicks()[station] = stat_picks
def drawPicks(self, station=None):
# if picks to draw not specified, draw all picks available
if not station:
for station in self.getPicks():
self.drawPicks(station)
return
# plotting picks
plotID = self.getStationID(station)
ax = self.getPlotWidget().axes
ylims = np.array([-.5, +.5]) + plotID
phase_col = {'P': ('c', 'c--', 'b-'),
'S': ('m', 'm--', 'r-')}
stat_picks = self.getPicks()[station]
for phase in stat_picks:
picks = stat_picks[phase]
colors = phase_col[phase[0].upper()]
mpp = picks['mpp']
epp = picks['epp']
lpp = picks['lpp']
spe = picks['spe']
ax.fill_between([epp, lpp], ylims[0], ylims[1],
alpha=.5, color=colors[0])
ax.plot([mpp - spe, mpp - spe], ylims, colors[1],
[mpp, mpp], ylims, colors[2],
[mpp + spe, mpp + spe], ylims, colors[1])
self.draw()
def updateStatus(self, message, duration=5000):
self.statusBar().showMessage(message, duration)
if self.getData() is not None:
if not self.getData().isNew():
self.setWindowTitle(
"PyLoT - processing event %s[*]" % self.getData().getID())
elif self.getData().isNew():
self.setWindowTitle("PyLoT - New event [*]")
else:
self.setWindowTitle(
"PyLoT - seismic processing the python way[*]")
self.setWindowModified(self.dirty)
def tutorUser(self):
self.updateStatus('select trace to pick on station ...', 10000)
def printEvent(self):
pass
def createNewEvent(self):
if self.okToContinue():
new = NewEventDlg()
if new.exec_() != QDialog.Rejected:
evtpar = new.getValues()
cinfo = createCreationInfo(agency_id=self.agency)
event = createEvent(evtpar['origintime'], cinfo)
self.data = Data(self, evtdata=event)
self.dirty = True
def draw(self):
self.getPlotWidget().draw()
def closeEvent(self, event):
if self.okToContinue():
self.closing.emit()
QMainWindow.closeEvent(self, event)
def PyLoTprefs(self):
props = PropertiesDlg(self)
if props.exec_():
return
def helpHelp(self):
if checkurl():
form = HelpForm(
'https://ariadne.geophysik.ruhr-uni-bochum.de/trac/PyLoT/wiki')
else:
form = HelpForm(':/help.html')
form.show()
def main():
# create the Qt application
pylot_app = QApplication(sys.argv)
pixmap = QPixmap(":/splash/splash.png")
splash = QSplashScreen(pixmap)
splash.show()
app_icon = QIcon()
app_icon.addPixmap(QPixmap(':/icons/pylot.png'))
# set Application Information
pylot_app.setOrganizationName("Ruhr-University Bochum / MAGS2")
pylot_app.setOrganizationDomain("rub.de")
pylot_app.setApplicationName("PyLoT")
pylot_app.setApplicationVersion(__version__)
pylot_app.setWindowIcon(app_icon)
# create the main window
pylot_form = MainWindow()
splash.showMessage('Loading. Please wait ...')
pylot_app.processEvents()
# Show main window and run the app
pylot_form.showMaximized()
splash.finish(pylot_form)
pylot_app.exec_()
if __name__ == "__main__":
sys.exit(main())