From 0ce41e5654099f2780d345cbe3d01bdc5853d93e Mon Sep 17 00:00:00 2001
From: "Kasper D. Fischer" <kasper.fischer@rub.de>
Date: Thu, 20 Mar 2025 11:27:46 +0100
Subject: [PATCH] Change resource limits and logging paths in submit_bot.sh

- Update h_vmem limit to 2.5G
- Add mem limit of 2.5G
- Set h_stack to INFINITY
- Change output log path to /data/www/~kasper/survBot/survBot_bg.log
- Change error log path to /data/www/~kasper/survBot/survBot_bg.err
- Enable email notifications for errors
- Update HTML output directory path
---
 submit_bot.sh | 17 +++++++++++------
 1 file changed, 11 insertions(+), 6 deletions(-)

diff --git a/submit_bot.sh b/submit_bot.sh
index 7b1f724..18a6cf1 100755
--- a/submit_bot.sh
+++ b/submit_bot.sh
@@ -1,19 +1,24 @@
 #!/bin/bash
-ulimit -s 8192
 
 #$ -l low
-#$ -l h_vmem=5G
+#$ -l h_vmem=2.5G
+#$ -l mem=2.5G
+#$ -l h_stack=INFINITY
 #$ -cwd
 #$ -pe smp 1
-#$ -N survBot_bg
-#$ -l os=*stretch
+#$ -binding linear:1
+#$ -N survBot
+#$ -o /data/www/~kasper/survBot/survBot_bg.log
+#$ -e /data/www/~kasper/survBot/survBot_bg.err
+#$ -m e
+#$ -M kasper.fischer@rub.de
 
 source /opt/anaconda3/etc/profile.d/conda.sh
-conda activate py37
+conda activate survBot
 
 # environment variables for numpy to prevent multi threading
 export MKL_NUM_THREADS=1
 export NUMEXPR_NUM_THREADS=1
 export OMP_NUM_THREADS=1
 
-python survBot.py -html '/data/www/~marcel/'
+python survBot.py -html '/data/www/~kasper/survBot'