move everything to local folder

local/examples/jobs/matlab_script.sh

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+#!/bin/bash
+
+#############################################################
+# This example produces a very simple plot and              #
+# saves it as Matlab figure file and as PNG file            #
+#############################################################
+
+#############################################################
+# set qsub options                                          #
+#############################################################
+# run in low.q
+#$ -l low
+
+# request enough memory
+#$ -l h_vmem=8G,memory=8G,h_stack=8M
+
+# request 1 matlab license.
+#$ -l matlab=1
+
+# Name the job 'Matlab'
+#$ -N Matlab
+
+# send e-mail after job has finished
+# use the -M option to define your e-mail address
+# #$ -M meine-email@example.org
+#$ -m e
+
+# join stdout and stderr in one file
+#$ -j y
+
+#############################################################
+# output hostname and date (comment out if not needed)      #
+#############################################################
+echo "Runnning Matlab on host " `hostname`
+echo "Starting Matlab at " `date`
+
+#############################################################
+# launch matlab                                             #
+#############################################################
+
+# run non-interactive Matlab session
+# use no display (-nodisplay)
+# don't show splash screen at startup (-nosplash)
+# don't start the matlab desktop (-nodesktop)
+# use software opengl (-softwareopengl)
+# only use single threaded computations (limit to use of 1 core, -singleCompThread)
+# execute all matlab commands between '<< END' and matching 'END'
+
+# Don't forget to add 'exit' and 'END' after replacing
+# the commands with your own!
+
+/opt/matlab/bin/matlab -nodisplay -nosplash -nodesktop -softwareopengl -singleCompThread << END
+
+  % get environment variable JOB_ID
+  jobid=str2num(getenv('JOB_ID'));
+  if isempty(jobid)
+     jobid = 0;
+  end
+
+  % create filenames for the figure
+  filename=sprintf('matlab_figure_%d', jobid);
+
+  % create new empty figure and save figure handle
+  fh = figure();
+
+  % draw plot
+  plot(-pi:0.01:pi, sin(-pi:0.01:pi));
+
+  % save figure as matlab figure and PNG
+  saveas(fh, filename, 'fig');
+  saveas(fh, filename, 'png');
+
+  % EXIT MATLAB
+  exit;
+
+END
+
+#############################################################
+# output date (comment out if not needed)                   #
+#############################################################
+echo "Matlab finnished at " `date`

local/examples/jobs/periodic_sleeper.sh

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+#!/bin/bash
+# This job script takes a nap for 10 seconds (or paramter $2) every 30 minutes (or paramter $1)
+
+# SGE options
+#$ -N PSleeper
+#$ -l scf=1M,mem=100M,h_vmem=100M
+#$ -q normal.q
+#$ -cwd
+
+# process args
+case "$1" in
+    -h)
+        echo "usage: $0 [-h | [-d] [T] [nap]]"
+        echo "periodically take a nap"
+        echo ""
+        echo "-h   print this help and exit"
+        echo "-d   print debug info"
+        echo "T    take a nap every T minutes (default: 30)"
+        echo "nap  take a nap for nap seconds (default: 10)"
+        exit 1
+        ;;
+    *)
+        debug=0
+        terse="-terse"
+        debug_flag=""
+        do_echo=0
+        T=30
+        nap=10
+        while (( "$#" )); do
+            case "$1" in
+                -d)
+                    debug=1
+                    terse=""
+                    debug_flag="-d"
+                    do_echo=1
+                    ;;
+                *)
+                    T=${1:-30}
+                    nap=${2:-10}
+                    break
+                    ;;
+            esac
+            shift
+        done
+        ;;
+esac
+
+# set other variables
+next=$(date -d "${T} minutes" +%Y%m%d%H%M)
+script=/opt/SGE/examples/jobs/periodic_sleeper.sh
+
+# output some informations
+if [ ${debug} -eq 1 ]; then
+    echo "T = ${T}, nap=${nap}"
+    echo "next run at ${next} (YYYYMMDDhhmm)"
+    echo "debug_flag = ${debug_flag}, do_echo = ${do_echo}"
+    echo ""
+fi
+
+# commands to run in Grid Engine
+/opt/SGE/examples/jobs/sleeper.sh ${nap} ${do_echo}
+
+# re-submit script to execute in T minutes
+jobid=$(qsub ${terse} -a ${next} ${script} ${debug_flag} ${T} ${nap})
+exit_code=$?
+if [ ${debug} -eq 1 ]; then
+    echo "${jobid}"
+fi
+if [ ${exit_code} -ne 0 ]; then
+    if [ ${debug} -eq 1 ]; then
+        echo "${jobid}"
+        echo "Ups, something went wrong, check output!"
+    fi
+    exit ${exit_code}
+fi

local/examples/jobs/show_available_cuda_devices.sh

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+#!/bin/bash
+#############################################################
+# use tensorflow to show availabel GPU devices              #
+# optional argument is the conda environment to use         #
+# default is tf-gpu                                         #
+#############################################################
+TF_ENV=${1:-tf-gpu}
+if [ ${TF_ENV} = "-h" ] ; then
+    echo "Usage: $(basename $0) [tensor_flow_env]"
+    exit 0
+fi
+
+#############################################################
+# set qsub options                                          #
+#############################################################
+#$ -cwd
+#$ -N CUDAtest
+#$ -l memory=64G,h_vmem=64G
+
+#############################################################
+# initialize conda                                          #
+#############################################################
+__conda_setup="$('/opt/anaconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
+if [ $? -eq 0 ]; then
+    eval "$__conda_setup"
+else
+    if [ -f "/opt/anaconda3/etc/profile.d/conda.sh" ]; then
+        . "/opt/anaconda3/etc/profile.d/conda.sh"
+    else
+        export PATH="/opt/anaconda3/bin:$PATH"
+    fi
+fi
+unset __conda_setup
+# <<< conda initialize <<<
+
+#############################################################
+# activate conda env ent call python commands               #
+#############################################################
+conda activate ${TF_ENV}
+export TF_CPP_MIN_LOG_LEVEL=3
+export TF_FORCE_GPU_ALLOW_GROWTH=true
+echo "CUDA_VISIBLE_DEVICES=${CUDA_VISIBLE_DEVICES:-''}."
+python3 -c "from tensorflow.python.client import device_lib; print(device_lib.list_local_devices())"
+conda deactivate

local/examples/jobs/simple_conda_test.sh

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+#! /bin/bash
+
+#############################################################
+# This example show a list of availabel conda environments  #
+#############################################################
+
+#############################################################
+# set qsub options                                          #
+#############################################################
+# run in low.q
+#$ -l low
+
+# request enough memory
+# #$ -l h_vmem=8G,memory=8G,h_stack=8M
+
+# Name the job 'Conda-Test'
+#$ -N Conda-Test
+
+#############################################################
+# initialize conda                                          #
+#############################################################
+__conda_setup="$('/opt/anaconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
+if [ $? -eq 0 ]; then
+	eval "$__conda_setup"
+else
+	if [ -f "/opt/anaconda3/etc/profile.d/conda.sh" ]; then
+		. "/opt/anaconda3/etc/profile.d/conda.sh"
+	else
+		export PATH="/opt/anaconda3/bin:$PATH"
+	fi
+fi
+unset __conda_setup
+
+#############################################################
+# show conda environments                                   #
+#############################################################
+conda env list