reformat code
This commit is contained in:
parent
6597c881a6
commit
038caf4d54
@ -3,7 +3,6 @@
|
||||
|
||||
import os
|
||||
import glob
|
||||
import matplotlib.pyplot as plt
|
||||
from obspy.xseed import Parser
|
||||
from obspy.core import read, Stream, UTCDateTime
|
||||
from obspy import readEvents, read_inventory
|
||||
@ -57,31 +56,61 @@ class Data(object):
|
||||
return str(self.wfdata)
|
||||
|
||||
def getParent(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self._parent
|
||||
|
||||
def isNew(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.newevent
|
||||
|
||||
def getCutTimes(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
if self.cuttimes is None:
|
||||
self.updateCutTimes()
|
||||
return self.cuttimes
|
||||
|
||||
def updateCutTimes(self):
|
||||
"""
|
||||
|
||||
|
||||
"""
|
||||
self.cuttimes = getGlobalTimes(self.getWFData())
|
||||
|
||||
def getEventFileName(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
ID = self.getID()
|
||||
# handle forbidden filenames especially on windows systems
|
||||
return fnConstructor(str(ID))
|
||||
|
||||
def exportEvent(self, fnout, fnext='.xml'):
|
||||
|
||||
"""
|
||||
|
||||
:param fnout:
|
||||
:param fnext:
|
||||
:raise KeyError:
|
||||
"""
|
||||
from pylot.core.util.defaults import OUTPUTFORMATS
|
||||
|
||||
try:
|
||||
evtformat = OUTPUTFORMATS[fnext]
|
||||
except KeyError, e:
|
||||
except KeyError as e:
|
||||
errmsg = '{0}; selected file extension {1} not ' \
|
||||
'supported'.format(e, fnext)
|
||||
raise FormatError(errmsg)
|
||||
@ -89,24 +118,42 @@ class Data(object):
|
||||
# try exporting event via ObsPy
|
||||
try:
|
||||
self.getEvtData().write(fnout + fnext, format=evtformat)
|
||||
except KeyError, e:
|
||||
except KeyError as e:
|
||||
raise KeyError('''{0} export format
|
||||
not implemented: {1}'''.format(evtformat, e))
|
||||
|
||||
def getComp(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.comp
|
||||
|
||||
def getID(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
try:
|
||||
return self.evtdata.get('resource_id').id
|
||||
except:
|
||||
return None
|
||||
|
||||
def filterWFData(self, kwargs):
|
||||
"""
|
||||
|
||||
:param kwargs:
|
||||
"""
|
||||
self.getWFData().filter(**kwargs)
|
||||
self.dirty = True
|
||||
|
||||
def setWFData(self, fnames):
|
||||
"""
|
||||
|
||||
:param fnames:
|
||||
"""
|
||||
self.wfdata = Stream()
|
||||
self.wforiginal = None
|
||||
if fnames is not None:
|
||||
@ -115,6 +162,10 @@ class Data(object):
|
||||
self.dirty = False
|
||||
|
||||
def appendWFData(self, fnames):
|
||||
"""
|
||||
|
||||
:param fnames:
|
||||
"""
|
||||
assert isinstance(fnames, list), "input parameter 'fnames' is " \
|
||||
"supposed to be of type 'list' " \
|
||||
"but is actually {0}".format(type(
|
||||
@ -129,27 +180,51 @@ class Data(object):
|
||||
except TypeError:
|
||||
try:
|
||||
self.wfdata += read(fname, format='GSE2')
|
||||
except Exception, e:
|
||||
except Exception as e:
|
||||
warnmsg += '{0}\n{1}\n'.format(fname, e)
|
||||
if warnmsg:
|
||||
warnmsg = 'WARNING: unable to read\n' + warnmsg
|
||||
print warnmsg
|
||||
print(warnmsg)
|
||||
|
||||
def getWFData(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.wfdata
|
||||
|
||||
def getOriginalWFData(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.wforiginal
|
||||
|
||||
def resetWFData(self):
|
||||
"""
|
||||
|
||||
|
||||
"""
|
||||
self.wfdata = self.getOriginalWFData().copy()
|
||||
self.dirty = False
|
||||
|
||||
def resetPicks(self):
|
||||
"""
|
||||
|
||||
|
||||
"""
|
||||
self.getEvtData().picks = []
|
||||
|
||||
def restituteWFData(self, invdlpath, streams=None):
|
||||
if streams == None:
|
||||
"""
|
||||
|
||||
:param invdlpath:
|
||||
:param streams:
|
||||
:return:
|
||||
"""
|
||||
if streams is None:
|
||||
st = self.getWFData()
|
||||
else:
|
||||
st = streams
|
||||
@ -157,7 +232,7 @@ class Data(object):
|
||||
for tr in st:
|
||||
# remove underscores
|
||||
if tr.stats.station[3] == '_':
|
||||
tr.stats.station = tr.stats.station[0:3]
|
||||
tr.stats.station = tr.stats.station[0:3]
|
||||
dlp = '%s/*.dless' % invdlpath
|
||||
invp = '%s/*.xml' % invdlpath
|
||||
respp = '%s/*.resp' % invdlpath
|
||||
@ -167,47 +242,52 @@ class Data(object):
|
||||
|
||||
# check for dataless-SEED file
|
||||
if len(dlfile) >= 1:
|
||||
print "Found dataless-SEED file(s)!"
|
||||
print "Reading meta data information ..."
|
||||
print("Found dataless-SEED file(s)!")
|
||||
print("Reading meta data information ...")
|
||||
for j in range(len(dlfile)):
|
||||
print "Found dataless-SEED file %s" % dlfile[j]
|
||||
parser = Parser('%s' % dlfile[j])
|
||||
for i in range(len(st)):
|
||||
print("Found dataless-SEED file %s" % dlfile[j])
|
||||
parser = Parser('%s' % dlfile[j])
|
||||
for i in range(len(st)):
|
||||
# check, whether this trace has already been corrected
|
||||
try:
|
||||
st[i].stats.processing
|
||||
except:
|
||||
try:
|
||||
print "Correcting %s, %s for instrument response ..." \
|
||||
% (st[i].stats.station, st[i].stats.channel)
|
||||
try:
|
||||
print(
|
||||
"Correcting %s, %s for instrument response ..." \
|
||||
% (st[i].stats.station, st[i].stats.channel))
|
||||
# get corner frequencies for pre-filtering
|
||||
fny = st[i].stats.sampling_rate / 2
|
||||
fc21 = fny - (fny * 0.05)
|
||||
fc22 = fny - (fny * 0.02)
|
||||
prefilt = [0.5, 0.9, fc21, fc22]
|
||||
# instrument correction
|
||||
st[i].simulate(pre_filt=prefilt, seedresp={'filename': parser, \
|
||||
'date': st[i].stats.starttime, 'units': "VEL"})
|
||||
except ValueError, e:
|
||||
vmsg = '{0}'.format(e)
|
||||
print vmsg
|
||||
st[i].simulate(pre_filt=prefilt,
|
||||
seedresp={'filename': parser, \
|
||||
'date': st[
|
||||
i].stats.starttime,
|
||||
'units': "VEL"})
|
||||
except ValueError as e:
|
||||
vmsg = '{0}'.format(e)
|
||||
print(vmsg)
|
||||
else:
|
||||
print "Trace has already been corrected!"
|
||||
print("Trace has already been corrected!")
|
||||
# check for inventory-xml file
|
||||
if len(invfile) >= 1:
|
||||
print "Found inventory-xml file(s)!"
|
||||
print "Reading meta data information ..."
|
||||
print("Found inventory-xml file(s)!")
|
||||
print("Reading meta data information ...")
|
||||
for j in range(len(invfile)):
|
||||
print "Found inventory-xml file %s" % invfile[j]
|
||||
print("Found inventory-xml file %s" % invfile[j])
|
||||
inv = read_inventory(invfile[j], format="STATIONXML")
|
||||
for i in range(len(st)):
|
||||
for i in range(len(st)):
|
||||
# check, whether this trace has already been corrected
|
||||
try:
|
||||
st[i].stats.processing
|
||||
except:
|
||||
try:
|
||||
print "Correcting %s, %s for instrument response ..." \
|
||||
% (st[i].stats.station, st[i].stats.channel)
|
||||
try:
|
||||
print(
|
||||
"Correcting %s, %s for instrument response ..." \
|
||||
% (st[i].stats.station, st[i].stats.channel))
|
||||
# get corner frequencies for pre-filtering
|
||||
fny = st[i].stats.sampling_rate / 2
|
||||
fc21 = fny - (fny * 0.05)
|
||||
@ -216,57 +296,78 @@ class Data(object):
|
||||
# instrument correction
|
||||
st[i].attach_response(inv)
|
||||
st[i].remove_response(output='VEL', pre_filt=prefilt)
|
||||
except ValueError, e:
|
||||
vmsg = '{0}'.format(e)
|
||||
print vmsg
|
||||
else:
|
||||
print "Trace has already been corrected!"
|
||||
except ValueError as e:
|
||||
vmsg = '{0}'.format(e)
|
||||
print(vmsg)
|
||||
else:
|
||||
print("Trace has already been corrected!")
|
||||
# check for RESP-file
|
||||
if len(respfile) >= 1:
|
||||
print "Found response file(s)!"
|
||||
print "Reading meta data information ..."
|
||||
print("Found response file(s)!")
|
||||
print("Reading meta data information ...")
|
||||
for j in range(len(respfile)):
|
||||
print "Found RESP-file %s" % respfile[j]
|
||||
for i in range(len(st)):
|
||||
print("Found RESP-file %s" % respfile[j])
|
||||
for i in range(len(st)):
|
||||
# check, whether this trace has already been corrected
|
||||
try:
|
||||
st[i].stats.processing
|
||||
except:
|
||||
try:
|
||||
print "Correcting %s, %s for instrument response ..." \
|
||||
% (st[i].stats.station, st[i].stats.channel)
|
||||
try:
|
||||
print(
|
||||
"Correcting %s, %s for instrument response ..." \
|
||||
% (st[i].stats.station, st[i].stats.channel))
|
||||
# get corner frequencies for pre-filtering
|
||||
fny = st[i].stats.sampling_rate / 2
|
||||
fc21 = fny - (fny * 0.05)
|
||||
fc22 = fny - (fny * 0.02)
|
||||
prefilt = [0.5, 0.9, fc21, fc22]
|
||||
# instrument correction
|
||||
seedresp={'filename': respfile[0], 'date': st[0].stats.starttime, \
|
||||
'units': "VEL"}
|
||||
seedresp={'filename': respfile[0], 'date': st[0].stats.starttime, \
|
||||
'units': "VEL"}
|
||||
st[i].simulate(paz_remove=None, pre_filt=prefilt, seedresp=seedresp)
|
||||
except ValueError, e:
|
||||
vmsg = '{0}'.format(e)
|
||||
print vmsg
|
||||
else:
|
||||
print "Trace has already been corrected!"
|
||||
except ValueError as e:
|
||||
vmsg = '{0}'.format(e)
|
||||
print(vmsg)
|
||||
else:
|
||||
print("Trace has already been corrected!")
|
||||
|
||||
if len(respfile) < 1 and len(invfile) < 1 and len(dlfile) < 1:
|
||||
print "No dataless-SEED file,inventory-xml file nor RESP-file found!"
|
||||
print "Go on processing data without source parameter determination!"
|
||||
print(
|
||||
"No dataless-SEED file,inventory-xml file nor RESP-file found!")
|
||||
print(
|
||||
"Go on processing data without source parameter determination!")
|
||||
|
||||
return st
|
||||
|
||||
def getEvtData(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.evtdata
|
||||
|
||||
def applyEVTData(self, data, type='pick', authority_id='rub'):
|
||||
|
||||
"""
|
||||
|
||||
:param data:
|
||||
:param type:
|
||||
:param authority_id:
|
||||
:raise OverwriteError:
|
||||
"""
|
||||
|
||||
def applyPicks(picks):
|
||||
"""
|
||||
|
||||
:param picks:
|
||||
:raise OverwriteError:
|
||||
"""
|
||||
firstonset = None
|
||||
if self.getEvtData().picks:
|
||||
raise OverwriteError('Actual picks would be overwritten!')
|
||||
for station, onsets in picks.items():
|
||||
print 'Reading picks on station %s' % station
|
||||
print('Reading picks on station %s' % station)
|
||||
for label, phase in onsets.items():
|
||||
onset = phase['mpp']
|
||||
epp = phase['epp']
|
||||
@ -282,8 +383,8 @@ class Data(object):
|
||||
self.getEvtData().picks.append(pick)
|
||||
try:
|
||||
polarity = phase['fm']
|
||||
except KeyError, e:
|
||||
print 'No polarity information found for %s' % phase
|
||||
except KeyError as e:
|
||||
print('No polarity information found for %s' % phase)
|
||||
if firstonset is None or firstonset > onset:
|
||||
firstonset = onset
|
||||
|
||||
@ -294,9 +395,17 @@ class Data(object):
|
||||
self.getEvtData().resource_id = ID
|
||||
|
||||
def applyArrivals(arrivals):
|
||||
"""
|
||||
|
||||
:param arrivals:
|
||||
"""
|
||||
pass
|
||||
|
||||
def applyEvent(event):
|
||||
"""
|
||||
|
||||
:param event:
|
||||
"""
|
||||
pass
|
||||
|
||||
applydata = {'pick': applyPicks,
|
||||
@ -322,6 +431,10 @@ class GenericDataStructure(object):
|
||||
|
||||
def modifyFields(self, **kwargs):
|
||||
|
||||
"""
|
||||
|
||||
:param kwargs:
|
||||
"""
|
||||
assert isinstance(kwargs, dict), 'dictionary type object expected'
|
||||
|
||||
if not self.extraAllowed():
|
||||
@ -337,37 +450,67 @@ class GenericDataStructure(object):
|
||||
value = str(value)
|
||||
try:
|
||||
self.setFieldValue(key, value)
|
||||
except KeyError, e:
|
||||
except KeyError as e:
|
||||
errmsg = ''
|
||||
errmsg += 'WARNING:\n'
|
||||
errmsg += 'unable to set values for datastructure fields\n'
|
||||
errmsg += '%s; desired value was: %s\n' % (e, value)
|
||||
print errmsg
|
||||
print(errmsg)
|
||||
|
||||
def isField(self, key):
|
||||
"""
|
||||
|
||||
:param key:
|
||||
:return:
|
||||
"""
|
||||
return key in self.getFields().keys()
|
||||
|
||||
def getFieldValue(self, key):
|
||||
"""
|
||||
|
||||
:param key:
|
||||
:return:
|
||||
"""
|
||||
if self.isField(key):
|
||||
return self.getFields()[key]
|
||||
else:
|
||||
return
|
||||
|
||||
def setFieldValue(self, key, value):
|
||||
"""
|
||||
|
||||
:param key:
|
||||
:param value:
|
||||
:raise KeyError:
|
||||
"""
|
||||
if not self.extraAllowed() and key not in self.getAllowed():
|
||||
raise KeyError
|
||||
else:
|
||||
if not self.isField(key):
|
||||
print 'creating new field "%s"' % key
|
||||
print('creating new field "%s"' % key)
|
||||
self.getFields()[key] = value
|
||||
|
||||
def getFields(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.dsFields
|
||||
|
||||
def getExpandFields(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.expandFields
|
||||
|
||||
def setExpandFields(self, keys):
|
||||
"""
|
||||
|
||||
:param keys:
|
||||
"""
|
||||
expandFields = []
|
||||
for key in keys:
|
||||
if self.isField(key):
|
||||
@ -375,18 +518,38 @@ class GenericDataStructure(object):
|
||||
self.expandFields = expandFields
|
||||
|
||||
def getAllowed(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.allowedFields
|
||||
|
||||
def extraAllowed(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return not self.allowedFields
|
||||
|
||||
def updateNotAllowed(self, kwargs):
|
||||
"""
|
||||
|
||||
:param kwargs:
|
||||
:return:
|
||||
"""
|
||||
for key in kwargs:
|
||||
if key not in self.getAllowed():
|
||||
kwargs.__delitem__(key)
|
||||
return kwargs
|
||||
|
||||
def hasSuffix(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
try:
|
||||
self.getFieldValue('suffix')
|
||||
except KeyError:
|
||||
@ -397,6 +560,11 @@ class GenericDataStructure(object):
|
||||
return False
|
||||
|
||||
def expandDataPath(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
expandList = []
|
||||
for item in self.getExpandFields():
|
||||
expandList.append(self.getFieldValue(item))
|
||||
@ -405,6 +573,11 @@ class GenericDataStructure(object):
|
||||
return os.path.join(*expandList)
|
||||
|
||||
def getCatalogName(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return os.path.join(self.getFieldValue('root'), 'catalog.qml')
|
||||
|
||||
|
||||
@ -463,6 +636,10 @@ class SeiscompDataStructure(GenericDataStructure):
|
||||
self.modifiyFields(**kwargs)
|
||||
|
||||
def modifiyFields(self, **kwargs):
|
||||
"""
|
||||
|
||||
:param kwargs:
|
||||
"""
|
||||
if kwargs and isinstance(kwargs, dict):
|
||||
for key, value in kwargs.iteritems():
|
||||
key = str(key)
|
||||
@ -473,14 +650,19 @@ class SeiscompDataStructure(GenericDataStructure):
|
||||
value = str(value)
|
||||
try:
|
||||
self.setField(key, value)
|
||||
except KeyError, e:
|
||||
except KeyError as e:
|
||||
errmsg = ''
|
||||
errmsg += 'WARNING:\n'
|
||||
errmsg += 'unable to set values for SDS fields\n'
|
||||
errmsg += '%s; desired value was: %s\n' % (e, value)
|
||||
print errmsg
|
||||
print(errmsg)
|
||||
|
||||
def setFieldValue(self, key, value):
|
||||
"""
|
||||
|
||||
:param key:
|
||||
:param value:
|
||||
"""
|
||||
if self.isField(key):
|
||||
self.getFields()[key] = value
|
||||
else:
|
||||
@ -488,12 +670,27 @@ class SeiscompDataStructure(GenericDataStructure):
|
||||
'{field}'.format(field=key))
|
||||
|
||||
def getFields(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.__sdsFields
|
||||
|
||||
def getName(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
return self.__name
|
||||
|
||||
def expandDataPath(self):
|
||||
"""
|
||||
|
||||
|
||||
:return:
|
||||
"""
|
||||
fullChan = '{0}.{1}'.format(self.getFields()['CHAN'], self.getType())
|
||||
dataPath = os.path.join(self.getFields()['SDSdir'],
|
||||
self.getFields()['YEAR'],
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user