marcel/pylot
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Merge branch 'export-and-save-picks' into develop

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This commit is contained in:
Sebastian Wehling-Benatelli 2015-07-18 16:13:37 +02:00
commit 0b02e8c213
3 changed files with 87 additions and 45 deletions
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35
QtPyLoT.py
View File

@ -23,7 +23,7 @@ https://www.iconfinder.com/iconsets/flavour
(http://www.gnu.org/copyleft/lesser.html)
"""
import sys
import os, sys
import matplotlib
matplotlib.use('Qt4Agg')
@ -64,7 +64,6 @@ class MainWindow(QMainWindow):
super(MainWindow, self).__init__(parent)
self.createAction = createAction
self.dirty = False
settings = QSettings()
if settings.value("user/FullName", None) is None:
fulluser = QInputDialog.getText(self, "Enter Name:", "Full name")
@ -102,8 +101,8 @@ class MainWindow(QMainWindow):
self.data = Data(self)
# load and display waveform data
self.loadWaveformData()
self.dirty = False
self.loadWaveformData()
self.loadData()
self.updateFilterOptions()
@ -333,6 +332,10 @@ class MainWindow(QMainWindow):
self.fileMenu.addSeparator()
self.fileMenu.addAction(self.fileMenuActions[-1])
def getRoot(self):
settings = QSettings()
return settings.value("data/dataRoot")
def loadData(self, fname=None):
if fname is None:
try:
@ -390,18 +393,27 @@ class MainWindow(QMainWindow):
else:
return
def getEventFileName(self):
return self.getData().getEventFileName()
def saveData(self):
settings = QSettings()
exform = settings.value('data/exportFormat', 'QUAKEML')
self.getData().applyEVTData(self.getPicks())
try:
self.data.exportEvent(self.fname, exform)
self.getData().exportEvent(self.fname, exform)
except FormatError:
return False
except AttributeError, e:
print 'warning: {0}'.format(e)
fname = QFileDialog.getSaveFileName(self, 'Save event')
fname = fname[0]
self.getData().exportEvent(fname, exform)
directory = os.path.join(self.getRoot(), self.getEventFileName())
file_filter = "Seismic observation files (*.cnv *.obs *.xml)"
fname = QFileDialog.getSaveFileName(self, 'Save event data ...',
directory, file_filter)
fbasename, exform = os.path.splitext(fname[0])
if not fbasename:
return False
self.getData().exportEvent(fbasename, exform)
return True
def getComponent(self):
@ -455,7 +467,7 @@ class MainWindow(QMainWindow):
def loadWaveformData(self):
if self.fnames and self.okToContinue():
self.dirty = True
self.setDirty(True)
self.data.setWFData(self.fnames)
elif self.fnames is None and self.okToContinue():
self.data.setWFData(self.getWFFnames())
@ -585,6 +597,7 @@ class MainWindow(QMainWindow):
station=station,
picks=self.getPicksOnStation(station))
if pickDlg.exec_():
self.setDirty(True)
self.updateStatus('picks accepted ({0})'.format(station))
self.addPicks(station, pickDlg.getPicks())
self.drawPicks(station)
@ -593,6 +606,7 @@ class MainWindow(QMainWindow):
def autoPick(self):
list = QListWidget()
self.setDirty(True)
logDockWidget = QDockWidget("AutoPickLog", self)
logDockWidget.setObjectName("LogDockWidget")
logDockWidget.setAllowedAreas(Qt.LeftDockWidgetArea)
@ -700,11 +714,14 @@ class MainWindow(QMainWindow):
cinfo = createCreationInfo(agency_id=self.agency)
event = createEvent(evtpar['origintime'], cinfo)
self.data = Data(self, evtdata=event)
self.dirty = True
self.setDirty(True)
def draw(self):
self.getPlotWidget().draw()
def setDirty(self, value):
self.dirty = value
def closeEvent(self, event):
if self.okToContinue():
self.closing.emit()

91
pylot/core/read/data.py
View File

@ -3,9 +3,9 @@
import os
from obspy.core import (read, Stream, UTCDateTime)
from obspy.core import read, Stream, UTCDateTime
from obspy import readEvents, read_inventory
from obspy.core.event import (Event, Catalog)
from obspy.core.event import Event, ResourceIdentifier, Pick, WaveformStreamID
from pylot.core.read.io import readPILOTEvent
from pylot.core.util.utils import fnConstructor, getGlobalTimes
@ -46,6 +46,7 @@ class Data(object):
else: # create an empty Event object
self.newevent = True
self.evtdata = Event()
self.getEvtData().picks = []
self.wforiginal = None
self.cuttimes = None
self.dirty = False
@ -67,29 +68,25 @@ class Data(object):
def updateCutTimes(self):
self.cuttimes = getGlobalTimes(self.getWFData())
def exportEvent(self, fnout=None, evtformat='QUAKEML'):
def getEventFileName(self):
ID = self.getID()
# handle forbidden filenames especially on windows systems
return fnConstructor(str(ID))
def exportEvent(self, fnout, fnext='.xml'):
from pylot.core.util.defaults import OUTPUTFORMATS
if evtformat.strip() not in OUTPUTFORMATS.values():
errmsg = 'selected format {0} not available'.format(evtformat)
try:
evtformat = OUTPUTFORMATS[fnext]
except KeyError, e:
errmsg = '{0}; selected file extension {1} not ' \
'supported'.format(e, fnext)
raise FormatError(errmsg)
if fnout is None:
ID = self.getID()
# handle forbidden filenames especially on windows systems
fnout = fnConstructor(str(ID))
else:
fnout = fnConstructor(str(fnout))
evtformat = evtformat.upper().strip()
# establish catalog object (event object has no write method)
cat = Catalog()
cat.append(self.getEvtData())
# try exporting event via ObsPy
try:
cat.write(fnout + evtformat.lower(), format=evtformat)
self.getEvtData().write(fnout + fnext, format=evtformat)
except KeyError, e:
raise KeyError('''{0} export format
not implemented: {1}'''.format(evtformat, e))
@ -119,7 +116,7 @@ class Data(object):
assert isinstance(fnames, list), "input parameter 'fnames' is " \
"supposed to be of type 'list' " \
"but is actually {0}".format(type(
fnames))
fnames))
if self.dirty:
self.resetWFData()
@ -150,27 +147,57 @@ class Data(object):
st = self.getWFData()
inv = read_inventory(fninventory)
st.attach_response(inv)
pre_filt = (0.005, 0.006, 30.0, 35.0) # set in autoPyLoT.in
pre_filt = (0.005, 0.006, 30.0, 35.0) # set in autoPyLoT.in
st.remove_response(output='VEL', pre_filt=pre_filt)
def getEvtData(self):
return self.evtdata
def applyEVTData(self, data, type='pick'):
def applyEVTData(self, data, type='pick', authority_id='rub'):
def applyPicks(picks):
pass
firstonset = None
for station, onsets in picks.items():
print 'Reading picks on station %s' % station
for label, phase in onsets.items():
onset = phase['mpp']
epp = phase['epp']
lpp = phase['lpp']
error = phase['spe']
pick = Pick()
pick.time = onset
pick.time_errors.lower_uncertainty = onset - epp
pick.time_errors.upper_uncertainty = lpp - onset
pick.time_errors.uncertainty = error
pick.phase_hint = label
pick.waveform_id = WaveformStreamID(station_code=station)
self.getEvtData().picks.append(pick)
try:
polarity = phase['fm']
except KeyError, e:
print 'No polarity information found for %s' % phase
if firstonset is None or firstonset > onset:
firstonset = onset
if 'smi:local' in self.getID():
fonset_str = firstonset.strftime('%Y_%m_%d_%H_%M_%S')
ID = ResourceIdentifier('event/' + fonset_str)
ID.convertIDToQuakeMLURI(authority_id=authority_id)
self.getEvtData().resource_id = ID
def applyArrivals(arrivals):
pass
def applyEvent(event):
pass
applydata = {'pick':applyPicks,
'arrival':applyArrivals,
'event':applyEvent}
applydata = {'pick': applyPicks,
'arrival': applyArrivals,
'event': applyEvent}
applydata[type](data)
class GenericDataStructure(object):
'''
GenericDataBase type holds all information about the current data-
@ -280,14 +307,13 @@ class PilotDataStructure(GenericDataStructure):
'''
def __init__(self, **fields):
if not fields:
fields = {'database':'2006.01',
'root':'/data/Egelados/EVENT_DATA/LOCAL'}
fields = {'database': '2006.01',
'root': '/data/Egelados/EVENT_DATA/LOCAL'}
GenericDataStructure.__init__(self, **fields)
self.setExpandFields(['root','database'])
self.setExpandFields(['root', 'database'])
class SeiscompDataStructure(GenericDataStructure):
@ -304,7 +330,6 @@ class SeiscompDataStructure(GenericDataStructure):
filesuffix=None, **kwargs):
super(GenericDataStructure, self).__init__()
edate = UTCDateTime()
halfyear = UTCDateTime('1970-07-01')
sdate = UTCDateTime(edate - halfyear)
@ -324,9 +349,9 @@ class SeiscompDataStructure(GenericDataStructure):
# http://www.seiscomp3.org/wiki/doc/applications/slarchive/SDS
self.dsFields = {'root': '/data/SDS', 'YEAR': year, 'NET': '??',
'STA': '????', 'CHAN': 'HH?', 'TYPE': 'D', 'LOC': '',
'DAY': '{0:03d}'.format(sdate.julday)
}
'STA': '????', 'CHAN': 'HH?', 'TYPE': 'D', 'LOC': '',
'DAY': '{0:03d}'.format(sdate.julday)
}
self.modifiyFields(**kwargs)
def modifiyFields(self, **kwargs):

6
pylot/core/util/defaults.py
View File

@ -13,6 +13,6 @@ FILTERDEFAULTS = {'P': {'filtertype': None,
'order': 4,
'freq': [.5, 5]}}
OUTPUTFORMATS = {'QuakeML':'QUAKEML',
'VelEst':'CNV',
'NonLinLoc':'NLLOC_OBS'}
OUTPUTFORMATS = {'.xml':'QUAKEML',
'.cnv':'CNV',
'.obs':'NLLOC_OBS'}