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[refactor] further refactoring done -> obsolete functions deleted, imports optimized, output suppressed and calculation done in __init__

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Sebastian Wehling-Benatelli 2016-09-27 15:12:14 +02:00
parent 405402ffdc
commit 28a5cedbc6
1 changed files with 19 additions and 193 deletions
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212
pylot/core/analysis/magnitude.py
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@ -6,24 +6,23 @@ Created autumn/winter 2015.
:author: Ludger Küperkoch / MAGS2 EP3 working group :author: Ludger Küperkoch / MAGS2 EP3 working group
""" """
import os import os
import matplotlib.pyplot as plt import matplotlib.pyplot as plt
import numpy as np import numpy as np
from obspy.core import Stream, UTCDateTime
from obspy.core.event import Magnitude as ObspyMagnitude from obspy.core.event import Magnitude as ObspyMagnitude
from obspy.geodetics import degrees2kilometers from obspy.geodetics import degrees2kilometers
from scipy import integrate, signal
from scipy.optimize import curve_fit
from pylot.core.pick.utils import getsignalwin, crossings_nonzero_all, select_for_phase from pylot.core.pick.utils import getsignalwin, crossings_nonzero_all, select_for_phase
from pylot.core.util.utils import getPatternLine
from scipy.optimize import curve_fit
from scipy import integrate, signal
from pylot.core.util.dataprocessing import restitute_data, read_metadata
from pylot.core.util.utils import common_range, fit_curve from pylot.core.util.utils import common_range, fit_curve
def richter_magnitude_scaling(delta): def richter_magnitude_scaling(delta):
relation = np.loadtxt(os.path.join(os.path.expanduser('~'), relation = np.loadtxt(os.path.join(os.path.expanduser('~'),
'.pylot', 'richter_scaling.data')) '.pylot', 'richter_scaling.data'))
# prepare spline interpolation to calculate return value # prepare spline interpolation to calculate return value
func, params = fit_curve(relation[:,0], relation[:, 1]) func, params = fit_curve(relation[:, 0], relation[:, 1])
return func(delta, params) return func(delta, params)
@ -33,58 +32,53 @@ class Magnitude(object):
""" """
def __init__(self, stream, event, verbosity=False): def __init__(self, stream, event, verbosity=False):
self._type = "M"
self._plot_flag = False self._plot_flag = False
self._verbosity = verbosity self._verbosity = verbosity
self._event = event self._event = event
self._stream = stream self._stream = stream
self._magnitudes = dict() self._magnitudes = dict()
def __str__(self): def __str__(self):
print('number of stations used: {0}\n'.format(len(self.magnitudes.values()))) print('number of stations used: {0}\n'.format(len(self.magnitudes.values())))
print('\tstation\tmagnitude') print('\tstation\tmagnitude')
for s, m in self.magnitudes.items(): print('\t{0}\t{1}'.format(s, m)) for s, m in self.magnitudes.items(): print('\t{0}\t{1}'.format(s, m))
def __nonzero__(self): def __nonzero__(self):
return bool(self.magnitudes) return bool(self.magnitudes)
@property
def type(self):
return self._type
@property @property
def plot_flag(self): def plot_flag(self):
return self._plot_flag return self._plot_flag
@plot_flag.setter @plot_flag.setter
def plot_flag(self, value): def plot_flag(self, value):
self._plot_flag = value self._plot_flag = value
@property @property
def stream(self): def stream(self):
return self._stream return self._stream
@stream.setter @stream.setter
def stream(self, value): def stream(self, value):
self._stream = value self._stream = value
@property @property
def event(self): def event(self):
return self._event return self._event
@property @property
def arrivals(self): def arrivals(self):
return self._event.origins[0].arrivals return self._event.origins[0].arrivals
@property @property
def magnitudes(self): def magnitudes(self):
return self._magnitudes return self._magnitudes
@magnitudes.setter @magnitudes.setter
def magnitudes(self, value): def magnitudes(self, value):
""" """
@ -97,14 +91,12 @@ class Magnitude(object):
station, magnitude = value station, magnitude = value
self._magnitudes[station] = magnitude self._magnitudes[station] = magnitude
def calc(self):
def get(self): pass
return self.magnitudes
def net_magnitude(self): def net_magnitude(self):
if self: if self:
return np.median([M["mag"] for M in self.magnitudes.values()]) return ObspyMagnitude(mag=np.median([M["mag"] for M in self.magnitudes.values()]), type=self.type)
return None return None
@ -127,18 +119,17 @@ class RichterMagnitude(Magnitude):
super(RichterMagnitude, self).__init__(stream, event, verbosity) super(RichterMagnitude, self).__init__(stream, event, verbosity)
self._calc_win = calc_win self._calc_win = calc_win
self._type = 'ML'
self.calc()
@property @property
def calc_win(self): def calc_win(self):
return self._calc_win return self._calc_win
@calc_win.setter @calc_win.setter
def calc_win(self, value): def calc_win(self, value):
self._calc_win = value self._calc_win = value
def peak_to_peak(self, st, t0): def peak_to_peak(self, st, t0):
# simulate Wood-Anderson response # simulate Wood-Anderson response
@ -186,8 +177,7 @@ class RichterMagnitude(Magnitude):
return wapp return wapp
def calc(self):
def get(self):
for a in self.arrivals: for a in self.arrivals:
if a.phase not in 'sS': if a.phase not in 'sS':
continue continue
@ -207,7 +197,6 @@ class RichterMagnitude(Magnitude):
# use of custom relation functions # use of custom relation functions
mag = dict(mag=np.log10(wapp) + richter_magnitude_scaling(delta)) mag = dict(mag=np.log10(wapp) + richter_magnitude_scaling(delta))
self.magnitudes = (station, mag) self.magnitudes = (station, mag)
return self.magnitudes
class MomentMagnitude(Magnitude): class MomentMagnitude(Magnitude):
@ -226,72 +215,22 @@ class MomentMagnitude(Magnitude):
self._vp = vp self._vp = vp
self._Qp = Qp self._Qp = Qp
self._density = density self._density = density
self._type = 'Mw'
self.calc()
@property @property
def p_velocity(self): def p_velocity(self):
return self._vp return self._vp
@property @property
def p_attenuation(self): def p_attenuation(self):
return self._Qp return self._Qp
@property @property
def rock_density(self): def rock_density(self):
return self._density return self._density
def calc(self):
def run_calcMoMw(self):
picks = self.getpicks()
nllocfile = self.getNLLocfile()
wfdat = self.stream
self.picdic = None
for key in picks:
if picks[key]['P']['weight'] < 4:
# select waveform
selwf = wfdat.select(station=key)
if len(key) > 4:
Ppattern = '%s ? ? ? P' % key
elif len(key) == 4:
Ppattern = '%s ? ? ? P' % key
elif len(key) < 4:
Ppattern = '%s ? ? ? P' % key
nllocline = getPatternLine(nllocfile, Ppattern)
# get hypocentral distance, station azimuth and
# angle of incidence from NLLoc-location file
delta = float(nllocline.split(None)[21])
az = float(nllocline.split(None)[22])
inc = float(nllocline.split(None)[24])
# call subfunction to estimate source spectrum
# and to derive w0 and fc
[w0, fc] = calcsourcespec(selwf, picks[key]['P']['mpp'], \
self.get_metadata(), self.getvp(), delta, az, \
inc, self.getQp(), self.plot_flag)
if w0 is not None:
# call subfunction to calculate Mo and Mw
zdat = selwf.select(component="Z")
if len(zdat) == 0: # check for other components
zdat = selwf.select(component="3")
[Mo, Mw] = calcMoMw(zdat, w0, self.getrho(), self.getvp(),
delta)
else:
Mo = None
Mw = None
# add w0, fc, Mo and Mw to dictionary
picks[key]['P']['w0'] = w0
picks[key]['P']['fc'] = fc
picks[key]['P']['Mo'] = Mo
picks[key]['P']['Mw'] = Mw
self.picdic = picks
def get(self):
for a in self.arrivals: for a in self.arrivals:
if a.phase not in 'pP': if a.phase not in 'pP':
continue continue
@ -314,52 +253,6 @@ class MomentMagnitude(Magnitude):
M0, Mw = calcMoMw(wf, w0, self.rock_density, self.p_velocity, distance) M0, Mw = calcMoMw(wf, w0, self.rock_density, self.p_velocity, distance)
mag = dict(w0=w0, fc=fc, M0=M0, mag=Mw) mag = dict(w0=w0, fc=fc, M0=M0, mag=Mw)
self.magnitudes = (station, mag) self.magnitudes = (station, mag)
return self.magnitudes
def calc_woodanderson_pp(st, metadata, T0, win=10., verbosity=False):
if verbosity:
print ("Getting Wood-Anderson peak-to-peak amplitude ...")
print ("Simulating Wood-Anderson seismograph ...")
# poles, zeros and sensitivity of WA seismograph
# (see Uhrhammer & Collins, 1990, BSSA, pp. 702-716)
paz_wa = {
'poles': [5.6089 - 5.4978j, -5.6089 - 5.4978j],
'zeros': [0j, 0j],
'gain': 2080,
'sensitivity': 1
}
stime, etime = common_range(st)
st.trim(stime, etime)
invtype, inventory = metadata
st = restitute_data(st, invtype, inventory)
dt = st[0].stats.delta
st.simulate(paz_remove=None, paz_simulate=paz_wa)
# get RMS of both horizontal components
power = [np.power(tr.data, 2) for tr in st if tr.stats.channel[-1] not
in 'Z3']
if len(power) != 2:
raise ValueError('Wood-Anderson amplitude defintion only valid for '
'two horizontals: {0} given'.format(len(power)))
power_sum = power[0] + power[1]
sqH = np.sqrt(power_sum)
# get time array
th = np.arange(0, len(sqH) * dt, dt)
# get maximum peak within pick window
iwin = getsignalwin(th, T0 - stime, win)
wapp = np.max(sqH[iwin])
if verbosity:
print("Determined Wood-Anderson peak-to-peak amplitude: {0} "
"mm".format(wapp))
return wapp
def calcMoMw(wfstream, w0, rho, vp, delta): def calcMoMw(wfstream, w0, rho, vp, delta):
@ -697,70 +590,3 @@ def fitSourceModel(f, S, fc0, iplot):
plt.close() plt.close()
return w0, fc return w0, fc
def calc_richter_magnitude(e, wf, metadata, amp_win):
if e.origins:
o = e.origins[0]
mags = dict()
for a in o.arrivals:
if a.phase not in 'sS':
continue
pick = a.pick_id.get_referred_object()
station = pick.waveform_id.station_code
wf = select_for_phase(wf.select(
station=station), a.phase)
delta = degrees2kilometers(a.distance)
wapp = calc_woodanderson_pp(wf, metadata, pick.time,
amp_win)
# using standard Gutenberg-Richter relation
# TODO make the ML calculation more flexible by allowing
# use of custom relation functions
mag = np.log10(wapp) + richter_magnitude_scaling(delta)
mags[station] = mag
mag = np.median([M for M in mags.values()])
# give some information on the processing
print('number of stations used: {0}\n'.format(len(mags.values())))
print('stations used:\n')
for s in mags.keys(): print('\t{0}'.format(s))
return ObspyMagnitude(mag=mag, magnitude_type='ML')
else:
return None
def calc_moment_magnitude(e, wf, metadata, vp, Qp, rho):
if e.origins:
o = e.origins[0]
mags = dict()
for a in o.arrivals:
if a.phase in 'sS':
continue
pick = a.pick_id.get_referred_object()
station = pick.waveform_id.station_code
wf = wf.select(station=station)
if not wf:
continue
onset = pick.time
dist = degrees2kilometers(a.distance)
invtype, inventory = metadata
[corr_wf, rest_flag] = restitute_data(wf, invtype, inventory)
if not rest_flag:
print("WARNING: data for {0} could not be corrected".format(
station))
continue
w0, fc = calcsourcespec(corr_wf, onset, vp, dist, a.azimuth,
a.takeoff_angle, Qp, 0)
if w0 is None or fc is None:
continue
wf = select_for_phase(corr_wf, "P")
station_mag = calcMoMw(wf, w0, rho, vp, dist)
mags[station] = station_mag
mag = np.median([M[1] for M in mags.values()])
# give some information on the processing
print('number of stations used: {0}\n'.format(len(mags.values())))
print('stations used:\n')
for s in mags.keys(): print('\t{0}'.format(s))
return ObspyMagnitude(mag=mag, magnitude_type='Mw')
else:
return None