[bugsearch] trying to fix UnpicklingError by clearing GUI element containing attributes
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1f1d0aa118
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@ -2,6 +2,7 @@
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import sys
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import numpy as np
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from pylot.core.active import seismicshot
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from pylot.core.active.surveyUtils import cleanUp
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class Survey(object):
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def __init__(self, path, sourcefile, receiverfile, useDefaultParas = False):
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@ -127,11 +128,11 @@ class Survey(object):
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shot.setPickwindow(traceID, pickwin_used)
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shot.pickTraces(traceID, windowsize, folm, HosAic) # picker
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shot.setSNR(traceID)
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shot.setSNR(traceID)
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#if shot.getSNR(traceID)[0] < snrthreshold:
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if shot.getSNR(traceID)[0] < shot.getSNRthreshold(traceID):
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shot.removePick(traceID)
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# set epp and lpp if SNR > 1 (else earllatepicker cant set values)
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if shot.getSNR(traceID)[0] > 1:
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shot.setEarllatepick(traceID)
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@ -314,10 +315,10 @@ class Survey(object):
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# shotnumbers.append(shot.getShotnumber())
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# shotnumbers = [shotnumbers for (shotnumbers, shotnames) in sorted(zip(shotnumbers, shotnames))]
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for shotnumber in self.getShotlist():
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if index <= figPerSubplot:
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#ax = fig.add_subplot(3,3,i, projection = '3d', title = 'shot:'
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#ax = fig.add_subplot(3,3,i, projection = '3d', title = 'shot:'
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#+str(shot_dict[shotnumber].getShotnumber()), xlabel = 'X', ylabel = 'Y', zlabel = 'traveltime')
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#shot_dict[shotnumber].plot3dttc(ax = ax, plotpicks = True)
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ax = fig.add_subplot(3, 4, index)
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@ -374,7 +375,7 @@ class Survey(object):
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for shot in self.data.values():
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for traceID in shot.getTraceIDlist():
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if plotRemoved == False:
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if shot.getFlag(traceID) is not 0 or plotRemoved == True:
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if shot.getFlag(traceID) is not 0 or plotRemoved == True:
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dist.append(shot.getDistance(traceID))
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pick.append(shot.getPick(traceID))
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snrlog.append(math.log10(shot.getSNR(traceID)[0]))
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@ -428,6 +429,7 @@ class Survey(object):
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def saveSurvey(self, filename = 'survey.pickle'):
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import cPickle
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cleanUp(self)
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outfile = open(filename, 'wb')
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cPickle.dump(self, outfile, -1)
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@ -151,7 +151,7 @@ class SeismicShot(object):
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def getSymmetricPickError(self, traceID):
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pickerror = self.pick[traceID]['spe']
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if np.isnan(pickerror) == True:
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if np.isnan(pickerror) == True:
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print "SPE is NaN for shot %s, traceID %s"%(self.getShotnumber(), traceID)
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return pickerror
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@ -276,7 +276,7 @@ class SeismicShot(object):
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:param: traceID
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:type: int
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:param: cutwindow (equals HOScf 'cut' variable)
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:type: tuple
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@ -313,10 +313,10 @@ class SeismicShot(object):
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(self.pick[traceID]['epp'],
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self.pick[traceID]['lpp'],
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self.pick[traceID]['spe']) = earllatepicker(self.getSingleStream(traceID),
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nfac, (tnoise, tgap, tsignal),
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nfac, (tnoise, tgap, tsignal),
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self.getPickIncludeRemoved(traceID),
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stealthMode = True)
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# TEST OF 1/2 PICKERROR
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# self.pick[traceID]['spe'] *= 0.5
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# TEST OF 1/2 PICKERROR
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@ -630,7 +630,10 @@ class SeismicShot(object):
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def connectButton(event = None):
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cid = fig.canvas.mpl_connect('button_press_event', onclick)
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self.traces4plot[traceID]['cid'] = cid
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def cleanup(event):
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self.traces4plot[traceID] = {}
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fig = plt.figure()
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ax1 = fig.add_subplot(2,1,1)
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ax2 = fig.add_subplot(2,1,2, sharex = ax1)
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@ -640,18 +643,10 @@ class SeismicShot(object):
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button1.on_clicked(connectButton)
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button2 = Button(axb2, 'delete', color = 'green', hovercolor = 'grey')
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button2.on_clicked(rmPick)
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fig.canvas.mpl_connect('close_event', cleanup)
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if traceID not in self.traces4plot.keys():
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self.traces4plot[traceID] = {}
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self.traces4plot[traceID] = {'fig': fig,
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'ax1': ax1,
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'ax2': ax2,
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'axb1': axb1,
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'axb2': axb2,
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'button1': button1,
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'button2': button2,
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'cid': None}
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self.traces4plot[traceID] = dict(fig=fig, ax1=ax1, ax2=ax2, axb1=axb1, axb2=axb2, button1=button1,
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button2=button2, cid=None)
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self._drawStream(traceID)
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self._drawCFs(traceID, folm)
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@ -664,7 +659,7 @@ class SeismicShot(object):
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stime = getGlobalTimes(stream)[0]
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timeaxis = prepTimeAxis(stime, stream[0])
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timeaxis -= stime
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if ax is None:
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ax = self.traces4plot[traceID]['ax1']
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@ -678,18 +673,18 @@ class SeismicShot(object):
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ax.set_title('Shot: %s, traceID: %s, pick: %s'
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%(self.getShotnumber(), traceID, self.getPick(traceID)))
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ax.plot(timeaxis, stream[0].data, 'k', label = 'trace')
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ax.plot([self.getPick(traceID), self.getPick(traceID)],
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[ax.get_ylim()[0],
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ax.plot([self.getPick(traceID), self.getPick(traceID)],
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[ax.get_ylim()[0],
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ax.get_ylim()[1]],
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'r', label = 'most likely')
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if self.getEarliest(traceID) is not None:
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ax.plot([self.getEarliest(traceID), self.getEarliest(traceID)],
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[ax.get_ylim()[0],
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ax.plot([self.getEarliest(traceID), self.getEarliest(traceID)],
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[ax.get_ylim()[0],
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ax.get_ylim()[1]],
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'g:', label = 'earliest')
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if self.getLatest(traceID) is not None:
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ax.plot([self.getLatest(traceID), self.getLatest(traceID)],
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[ax.get_ylim()[0],
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ax.plot([self.getLatest(traceID), self.getLatest(traceID)],
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[ax.get_ylim()[0],
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ax.get_ylim()[1]],
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'b:', label = 'latest')
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@ -710,18 +705,18 @@ class SeismicShot(object):
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ax.plot(hoscf.getTimeArray(), hoscf.getCF(), 'b', label = 'HOS')
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ax.plot(hoscf.getTimeArray(), aiccf.getCF(), 'g', label = 'AIC')
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ax.plot([self.getPick(traceID), self.getPick(traceID)],
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[ax.get_ylim()[0],
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ax.plot([self.getPick(traceID), self.getPick(traceID)],
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[ax.get_ylim()[0],
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ax.get_ylim()[1]],
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'r', label = 'most likely')
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if self.getEarliest(traceID) is not None:
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ax.plot([self.getEarliest(traceID), self.getEarliest(traceID)],
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[ax.get_ylim()[0],
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ax.plot([self.getEarliest(traceID), self.getEarliest(traceID)],
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[ax.get_ylim()[0],
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ax.get_ylim()[1]],
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'g:', label = 'earliest')
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if self.getLatest(traceID) is not None:
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ax.plot([self.getLatest(traceID), self.getLatest(traceID)],
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[ax.get_ylim()[0],
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ax.plot([self.getLatest(traceID), self.getLatest(traceID)],
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[ax.get_ylim()[0],
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ax.get_ylim()[1]],
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'b:', label = 'latest')
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ax.plot([0, self.getPick(traceID)],
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@ -784,7 +779,7 @@ class SeismicShot(object):
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plotmethod = {'2d': self.plot2dttc, '3d': self.plot3dttc}
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plotmethod[method](*args)
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def matshow(self, ax = None, step = 0.5, method = 'linear', plotRec = True, annotations = True, colorbar = True):
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'''
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Plots a 2D matrix of the interpolated traveltimes. This needs less performance than plot3dttc
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@ -86,3 +86,8 @@ def findTracesInRanges(shot_dict, distancebin, pickbin):
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shots_found[shot.getShotnumber()].append(traceID)
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return shots_found
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def cleanUp(survey):
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for shot in survey.data.values():
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shot.traces4plot = {}
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