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Modified to run new function run_autopicking.

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This commit is contained in:
Ludger Küperkoch 2015-05-29 16:26:31 +02:00
parent 0c76c496fb
commit 6c73e30754
1 changed files with 23 additions and 23 deletions
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46
autoPyLoT.py
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@ -6,15 +6,17 @@ import os
import argparse
import glob
import matplotlib.pyplot as plt
from obspy.core import read
from pylot.core.util import _getVersionString
from pylot.core.read import Data, AutoPickParameter
from pylot.core.pick.CharFuns import HOScf, AICcf
from pylot.core.pick.run_autopicking import run_autopicking
from pylot.core.util.structure import DATASTRUCTURE
__version__ = _getVersionString()
METHOD = {'HOS':HOScf, 'AIC':AICcf}
#METHOD = {'HOS':HOScf, 'AIC':AICcf}
def autoPyLoT(inputfile):
'''
@ -37,16 +39,6 @@ def autoPyLoT(inputfile):
data = Data()
# declaring parameter variables (only for convenience)
meth = parameter.getParam('algoP')
tsnr1 = parameter.getParam('tsnr1')
tsnr2 = parameter.getParam('tsnr2')
tnoise = parameter.getParam('pnoiselen')
tsignal = parameter.getParam('tlim')
order = parameter.getParam('hosorder')
thosmw = parameter.getParam('tlta')
# getting information on data structure
if parameter.hasParam('datastructure'):
@ -60,30 +52,38 @@ def autoPyLoT(inputfile):
if parameter.hasParam('eventID'):
dsfields['eventID'] = parameter.getParam('eventID')
exf.append('eventID')
datastructure.modifyFields(**dsfields)
datastructure.modifyFields(**dsfields)
datastructure.setExpandFields(exf)
# process each event in database
# process each event in database
# get streams
# read each event in database
datapath = datastructure.expandDataPath()
if not parameter.hasParam('eventID'):
for event in [events for events in
glob.glob(os.path.join(datapath, '*'))
if os.path.isdir(events)]:
for event in [events for events in glob.glob(os.path.join(datapath, '*')) if os.path.isdir(events)]:
print 'Reading %s' %event
data.setWFData(glob.glob(os.path.join(datapath, event, '*')))
print data
#for single event processing
else:
data.setWFData(glob.glob(os.path.join(datapath,
parameter.getParam('eventID'),
'*')))
data.setWFData(glob.glob(os.path.join(datapath, parameter.getParam('eventID'), '*')))
print data
wfdat = data.getWFData() # all available streams
##########################################################
# !automated picking starts here!
for i in range(len(wfdat) - 2):
stationID = wfdat[i].stats.station
#find corresponding streams
statdat = wfdat.select(station=stationID)
run_autopicking(statdat, parameter)
if __name__ == "__main__":
# parse arguments
parser = argparse.ArgumentParser(
description='''This program ''')
description='''autoPyLoT automatically picks phase onset times using higher order statistics,
autoregressive prediction and AIC''')
parser.add_argument('-i', '-I', '--inputfile', type=str,
action='store',