added writeVTK files

This commit is contained in:
Marcel Paffrath 2015-11-16 11:49:57 +01:00
parent 0a0ab4bfa9
commit 78d61a9822

View File

@ -383,7 +383,7 @@ class SeisArray(object):
def generateFMTOMOinputFromArray(self, nRP, nThetaP, nPhiP, nRI, nThetaI, nPhiI, def generateFMTOMOinputFromArray(self, nRP, nThetaP, nPhiP, nRI, nThetaI, nPhiI,
Rbt, cushionfactor, interpolationMethod = 'linear', Rbt, cushionfactor, interpolationMethod = 'linear',
customgrid = 'mygrid.in'): customgrid = 'mygrid.in', writeVTK = True):
print('\n------------------------------------------------------------') print('\n------------------------------------------------------------')
print('Automatically generating input for FMTOMO from array size.') print('Automatically generating input for FMTOMO from array size.')
print('Propgrid: nR = %s, nTheta = %s, nPhi = %s'%(nRP, nThetaP, nPhiP)) print('Propgrid: nR = %s, nTheta = %s, nPhi = %s'%(nRP, nThetaP, nPhiP))
@ -406,8 +406,36 @@ class SeisArray(object):
depthmax = abs(Rbt[0] - getZmin(surface)) - 1.0 # cushioning for the bottom interface depthmax = abs(Rbt[0] - getZmin(surface)) - 1.0 # cushioning for the bottom interface
self.generateInterfaces(nThetaI, nPhiI, depthmax, cushionfactor = cushionfactor, interf1, interf2 = self.generateInterfaces(nThetaI, nPhiI, depthmax, cushionfactor = cushionfactor,
returnInterfaces = False, method = interpolationMethod) returnInterfaces = True, method = interpolationMethod)
if writeVTK == True:
from pylot.core.active import fmtomoUtils
self.surface2VTK(interf1, filename = 'interface1.vtk')
self.surface2VTK(interf2, filename = 'interface2.vtk')
self.receivers2VTK()
self.sources2VTK()
fmtomoUtils.vgrids2VTK()
def generateReceiversIn(self, outfilename = 'receivers.in'):
outfile = open(outfilename, 'w')
recx, recy, recz = self.getReceiverLists()
nsrc = len(self.getSourceLocations())
outfile.writelines('%s\n'%(len(zip(recx, recy, recz)) * nsrc))
for index in range(nsrc):
for point in zip(recx, recy, recz):
rx, ry, rz = point
rad = - rz
lat = self._getAngle(ry)
lon = self._getAngle(rx)
outfile.writelines('%15s %15s %15s\n'%(rad, lat, lon))
outfile.writelines('%15s\n'%(1))
outfile.writelines('%15s\n'%(index + 1))
outfile.writelines('%15s\n'%(1))
outfile.close()
def generateInterfaces(self, nTheta, nPhi, depthmax, cushionfactor = 0.1, def generateInterfaces(self, nTheta, nPhi, depthmax, cushionfactor = 0.1,
@ -698,147 +726,6 @@ class SeisArray(object):
if returnTopo == True: if returnTopo == True:
return surface return surface
def addCheckerboard(self, spacing = 20., pertubation = 0.1, inputfile = 'vgrids.in', outputfile = 'vgrids_cb.in'):
'''
Add a checkerboard to an existing vgrids.in velocity model.
:param: spacing, size of the tiles
type: float
:param: pertubation, pertubation (default: 0.1 = 10%)
type: float
'''
def readNumberOfPoints(filename):
fin = open(filename, 'r')
vglines = fin.readlines()
nR = int(vglines[1].split()[0])
nTheta = int(vglines[1].split()[1])
nPhi = int(vglines[1].split()[2])
print('readNumberOf Points: Awaiting %d grid points in %s'
%(nR*nTheta*nPhi, filename))
fin.close()
return nR, nTheta, nPhi
def readDelta(filename):
fin = open(filename, 'r')
vglines = fin.readlines()
dR = float(vglines[2].split()[0])
dTheta = float(vglines[2].split()[1])
dPhi = float(vglines[2].split()[2])
fin.close()
return dR, dTheta, dPhi
def readStartpoints(filename):
fin = open(filename, 'r')
vglines = fin.readlines()
sR = float(vglines[3].split()[0])
sTheta = float(vglines[3].split()[1])
sPhi = float(vglines[3].split()[2])
fin.close()
return sR, sTheta, sPhi
def readVelocity(filename):
'''
Reads in velocity from vgrids file and returns a list containing all values in the same order
'''
vel = []; count = 0
fin = open(filename, 'r')
vglines = fin.readlines()
for line in vglines:
count += 1
if count > 4:
vel.append(float(line.split()[0]))
print("Read %d points out of file: %s" %(count - 4, filename))
return vel
def correctSpacing(spacing, delta, disttype = None):
if spacing > delta:
spacing_corr = round(spacing / delta) * delta
elif spacing < delta:
spacing_corr = delta
print('The spacing of the checkerboard of %s (%s) was corrected to '
'a value of %s to fit the grid spacing of %s.' %(spacing, disttype, spacing_corr, delta))
return spacing_corr
R = 6371. # earth radius
decm = 0.3 # diagonal elements of the covariance matrix (grid3dg's default value is 0.3)
outfile = open(outputfile, 'w')
# Theta, Phi in radians, R in km
nR, nTheta, nPhi = readNumberOfPoints(inputfile)
dR, dThetaRad, dPhiRad = readDelta(inputfile)
sR, sThetaRad, sPhiRad = readStartpoints(inputfile)
vel = readVelocity(inputfile)
dTheta, dPhi = np.rad2deg((dThetaRad, dPhiRad))
sTheta, sPhi = np.rad2deg((dThetaRad, dPhiRad))
eR = sR + (nR - 1) * dR
ePhi = sPhi + (nPhi - 1) * dPhi
eTheta = sTheta + (nTheta - 1) * dTheta
nPoints = nR * nTheta * nPhi
thetaGrid = np.linspace(sTheta, eTheta, num = nTheta)
phiGrid = np.linspace(sPhi, ePhi, num = nPhi)
rGrid = np.linspace(sR, eR, num = nR)
# write header for velocity grid file (in RADIANS)
outfile.writelines('%10s %10s \n' %(1, 1))
outfile.writelines('%10s %10s %10s\n' %(nR, nTheta, nPhi))
outfile.writelines('%10s %10s %10s\n' %(dR, dThetaRad, dPhiRad))
outfile.writelines('%10s %10s %10s\n' %(sR, sThetaRad, sPhiRad))
spacR = correctSpacing(spacing, dR, '[meter], R')
spacTheta = correctSpacing(self._getAngle(spacing), dTheta, '[degree], Theta')
spacPhi = correctSpacing(self._getAngle(spacing), dPhi, '[degree], Phi')
count = 0
evenOdd = 1
even = 0; odd = 0
# In the following loop it is checked whether the positive distance from the border of the model
# for a point on the grid divided by the spacing is even or odd and then pertubated.
# The position is also shifted by half of the delta so that the position is directly on the point and
# not on the border between two points.
for radius in rGrid:
if np.floor((radius - sR - dR/2) / spacR) % 2:
evenOddR = 1
else:
evenOddR = -1
for theta in thetaGrid:
if np.floor((theta - sTheta - dTheta/2) / spacTheta) % 2:
evenOddT = 1
else:
evenOddT = -1
for phi in phiGrid:
if np.floor((phi - sPhi - dPhi/2) / spacPhi) % 2:
evenOddP = 1
else:
evenOddP = -1
velocity = vel[count]
evenOdd = evenOddR * evenOddT * evenOddP
velocity += evenOdd * pertubation * velocity
outfile.writelines('%10s %10s\n'%(velocity, decm))
count += 1
progress = float(count) / float(nPoints) * 100
self._update_progress(progress)
print('Added checkerboard to the grid in file %s with a spacing of %s and a pertubation of %s [km/s]. '
'Outputfile: %s.'%(inputfile, spacing, pertubation, outputfile))
outfile.close()
def exportAll(self, filename = 'interpolated_receivers.out'): def exportAll(self, filename = 'interpolated_receivers.out'):
recfile_out = open(filename, 'w') recfile_out = open(filename, 'w')
count = 0 count = 0