[minor] small code changes
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Darius Arnold
parent
b4316ae717
commit
97458b5b42
@ -215,7 +215,7 @@ class PickingResults(dict):
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self.Mo = None
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# flags for plotting
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self.aicPflag = 0
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self.p_aic_plot_flag = 0
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self.aicSflag = 0
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self.Pflag = 0
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self.Sflag = 0
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@ -459,7 +459,7 @@ class AutopickStation(object):
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def get_traces_from_streams(self):
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"""
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Extract Trace from Stream. If a component has data, an empty trace will be returned
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Extract Trace from Stream. If a component has no data, an empty trace will be returned
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:return: Tuple of obspy.Trace instances in order ZNE
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:rtype: (obspy.Trace)
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"""
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@ -673,7 +673,7 @@ class AutopickStation(object):
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if self.p_results.Pweight < 4:
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# plot CF of initial onset (HOScf or ARZcf)
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ax1.plot(self.cf1.getTimeArray(), self.cf1.getCF()/max(self.cf1.getCF()), 'b', label='CF1')
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if self.p_results.aicPflag == 1:
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if self.p_results.p_aic_plot_flag == 1:
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aicpick = self.p_results.aicpick
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refPpick = self.p_results.refPpick
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# plot CF of precise pick (HOScf or ARZcf)
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@ -778,7 +778,7 @@ class AutopickStation(object):
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pass
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plt.close(fig)
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def _pick_p_qc1(self, aicpick, z_copy, tr_filt):
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def _pick_p_qality_control(self, aicpick, z_copy, tr_filt):
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"""
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Quality control of first pick using minseglength and checkZ4S.
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:param aicpick: Instance of AICPicker to run quality control on
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@ -824,7 +824,7 @@ class AutopickStation(object):
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return 0
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if self.nstream == self.estream:
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# todo: old implementation skipped this test if one component was misisng, why not use one component?
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# todo: old implementation skipped this test if one component was missing, why not use one component?
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msg = 'One or more horizontal components missing!\n Skipping control function checkZ4S.'
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self.vprint(msg)
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return 1
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@ -845,9 +845,6 @@ class AutopickStation(object):
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:raises:
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MissingTraceException: If vertical trace is missing.
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"""
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if not self.zstream or self.zstream is None:
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raise MissingTraceException('No z-component found for station {}'.format(self.station_name))
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msg = '##################################################\nautopickstation:' \
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' Working on P onset of station {station}\nFiltering vertical ' \
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'trace ...\n{data}'.format(station=self.station_name, data=str(self.zstream))
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@ -867,18 +864,16 @@ class AutopickStation(object):
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# calculate first CF
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if self.p_params.algoP == 'HOS':
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cf1 = HOScf(z_copy, cuttimes, self.p_params.tlta, self.p_params.hosorder)
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self.cf1 = HOScf(z_copy, cuttimes, self.p_params.tlta, self.p_params.hosorder)
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elif self.p_params.algoP == 'ARZ':
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cf1 = ARZcf(z_copy, cuttimes, self.p_params.tpred1z, self.p_params.Parorder, self.p_params.tdet1z,
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self.cf1 = ARZcf(z_copy, cuttimes, self.p_params.tpred1z, self.p_params.Parorder, self.p_params.tdet1z,
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self.p_params.addnoise)
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else:
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cf1 = None
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# save cf1 for plotting
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self.cf1 = cf1
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assert isinstance(cf1, CharacteristicFunction), 'cf1 is not set correctly: maybe the algorithm name ({}) is ' \
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'corrupted'.format(self.p_params.algoP)
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self.cf1 = None
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assert isinstance(self.cf1, CharacteristicFunction), 'cf1 is not set correctly: maybe the algorithm name ({})' \
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' is corrupted'.format(self.p_params.algoP)
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# calculate AIC cf from first cf (either HOS or ARZ)
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z_copy[0].data = cf1.getCF()
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z_copy[0].data = self.cf1.getCF()
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aiccf = AICcf(z_copy, cuttimes)
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# get preliminary onset time from AIC-CF
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fig, linecolor = get_fig_from_figdict(self.fig_dict, 'aicFig')
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@ -894,7 +889,7 @@ class AutopickStation(object):
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ax.vlines(self.p_params.pstop, ax.get_ylim()[0], ax.get_ylim()[1], color='c', linestyles='dashed', label='P stop')
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ax.legend(loc=1)
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Pflag = self._pick_p_qc1(aicpick, z_copy, tr_filt)
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Pflag = self._pick_p_qality_control(aicpick, z_copy, tr_filt)
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# go on with processing if AIC onset passes quality control
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slope = aicpick.getSlope()
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if not slope: slope = 0
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@ -908,7 +903,7 @@ class AutopickStation(object):
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error_msg = 'AIC P onset SNR to small: got {}, min {}'.format(aicpick.getSNR(), self.p_params.minAICPSNR)
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raise PickingFailedException(error_msg)
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self.p_results.aicPflag = 1
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self.p_results.p_aic_plot_flag = 1
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msg = 'AIC P-pick passes quality control: Slope: {0} counts/s, SNR: {1}\nGo on with refined picking ...\n' \
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'autopickstation: re-filtering vertical trace...'.format(aicpick.getSlope(), aicpick.getSNR())
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self.vprint(msg)
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@ -919,18 +914,16 @@ class AutopickStation(object):
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# determine new times around initial onset
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cuttimes2 = self._calculate_cuttimes('P', 2)
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if self.p_params.algoP == 'HOS':
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cf2 = HOScf(z_copy, cuttimes2, self.p_params.tlta, self.p_params.hosorder)
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self.cf2 = HOScf(z_copy, cuttimes2, self.p_params.tlta, self.p_params.hosorder)
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elif self.p_params.algoP == 'ARZ':
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cf2 = ARZcf(z_copy, cuttimes2, self.p_params.tpred2z, self.p_params.Parorder, self.p_params.tdet2z, self.p_params.addnoise)
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self.cf2 = ARZcf(z_copy, cuttimes2, self.p_params.tpred2z, self.p_params.Parorder, self.p_params.tdet2z, self.p_params.addnoise)
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else:
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cf2 = None
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# save cf2 for plotting
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self.cf2 = cf2
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assert isinstance(cf2, CharacteristicFunction), 'cf2 is not set correctly: maybe the algorithm name () is ' \
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self.cf2 = None
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assert isinstance(self.cf2, CharacteristicFunction), 'cf2 is not set correctly: maybe the algorithm name () is ' \
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'corrupted'.format(self.p_params.algoP)
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fig, linecolor = get_fig_from_figdict(self.fig_dict, 'refPpick')
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# get refined onset time from CF2
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refPpick = PragPicker(cf2, self.p_params.tsnrz, self.p_params.pickwinP, self.iplot, self.p_params.ausP,
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refPpick = PragPicker(self.cf2, self.p_params.tsnrz, self.p_params.pickwinP, self.iplot, self.p_params.ausP,
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self.p_params.tsmoothP, aicpick.getpick(), fig, linecolor)
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# save PragPicker result for plotting
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self.p_results.refPpick = refPpick
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@ -957,10 +950,10 @@ class AutopickStation(object):
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self.p_results.FM = fmpicker(self.zstream, z_copy, self.first_motion_params.fmpickwin,
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self.p_results.mpickP, self.iplot, fig, linecolor)
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msg = "autopickstation: P-weight: {}, SNR: {}, SNR[dB]: {}, Polarity: {}"
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msg.format(self.p_results.Pweight, self.p_results.SNRP, self.p_results.SNRPdB, self.p_results.FM)
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msg = msg.format(self.p_results.Pweight, self.p_results.SNRP, self.p_results.SNRPdB, self.p_results.FM)
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print(msg)
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msg = 'autopickstation: Refined P-Pick: {} s | P-Error: {} s'
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msg.format(self.p_results.mpickP, self.p_results.Perror)
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msg = msg.format(self.p_results.mpickP, self.p_results.Perror)
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print(msg)
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self.s_results.Sflag = 1
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@ -1070,16 +1063,14 @@ class AutopickStation(object):
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def _pick_s_calculate_ar_cf_2(self):
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cuttimesh2 = self._calculate_cuttimes('S', 2)
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# refilter waveform with larger bandpass
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trH1_filt, _ = self.prepare_wfstream(self.estream, freqmin=self.s_params.bph2[0], freqmax=self.s_params.bph2[1])
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trH2_filt, _ = self.prepare_wfstream(self.nstream, freqmin=self.s_params.bph2[0], freqmax=self.s_params.bph2[1])
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if self.s_params.algoS == 'ARH':
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trH1_filt, _ = self.prepare_wfstream(self.estream, freqmin=self.s_params.bph2[0], freqmax=self.s_params.bph2[1])
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trH2_filt, _ = self.prepare_wfstream(self.nstream, freqmin=self.s_params.bph2[0], freqmax=self.s_params.bph2[1])
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h_copy = self.hdat.copy()
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h_copy[0].data = trH1_filt.data
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h_copy[1].data = trH2_filt.data
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elif self.s_params.algoS == 'AR3':
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trH3_filt, _ = self.prepare_wfstream(self.zstream, freqmin=self.s_params.bph2[0], freqmax=self.s_params.bph2[1])
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trH1_filt, _ = self.prepare_wfstream(self.estream, freqmin=self.s_params.bph2[0], freqmax=self.s_params.bph2[1])
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trH2_filt, _ = self.prepare_wfstream(self.nstream, freqmin=self.s_params.bph2[0], freqmax=self.s_params.bph2[1])
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h_copy = self.hdat.copy()
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h_copy[0].data = trH3_filt.data
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h_copy[1].data = trH1_filt.data
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@ -1091,11 +1082,9 @@ class AutopickStation(object):
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# calculate second cf
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if self.s_params.algoS == 'ARH':
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arhcf2 = ARHcf(h_copy, cuttimesh2, self.s_params.tpred2h, self.s_params.Sarorder, self.s_params.tdet2h,
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self.p_params.addnoise)
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arhcf2 = ARHcf(h_copy, cuttimesh2, self.s_params.tpred2h, self.s_params.Sarorder, self.s_params.tdet2h, self.p_params.addnoise)
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elif self.s_params.algoS == 'AR3':
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arhcf2 = AR3Ccf(h_copy, cuttimesh2, self.s_params.tpred2h, self.s_params.Sarorder, self.s_params.tdet2h,
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self.p_params.addnoise)
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arhcf2 = AR3Ccf(h_copy, cuttimesh2, self.s_params.tpred2h, self.s_params.Sarorder, self.s_params.tdet2h, self.p_params.addnoise)
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# save cf for later plotting
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self.arhcf2 = arhcf2
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