Merge branch 'develop' of ariadne.geophysik.ruhr-uni-bochum.de:/data/git/pylot into develop
This commit is contained in:
Marcel Paffrath
commit
a2eb5868a7
67
autoPyLoT.py
67
autoPyLoT.py
@ -133,14 +133,32 @@ def autoPyLoT(inputfile):
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else:
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# get theoretical P-onset times from NLLoc-location file
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locsearch = '%s/loc/%s.????????.??????.grid?.loc.hyp' % (nllocroot, nllocout)
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# get latest file if several are available
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nllocfile = max(glob.glob(locsearch), key=os.path.getctime)
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if os.path.isfile(nllocfile):
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picks = iteratepicker(wfdat, nllocfile, picks, badpicks, parameter)
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# write phases to NLLoc-phase file
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picksExport(picks, 'NLLoc', phasefile)
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# locate the event
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locate(nlloccall, ctrfile)
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maxnumit = 3 # maximum number of iterations
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if len(glob.glob(locsearch)) > 0:
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# get latest file if several are available
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nllocfile = max(glob.glob(locsearch), key=os.path.getctime)
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nlloccounter = 0
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while len(badpicks) > 0 and nlloccounter <= maxnumit:
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nlloccounter += 1
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if nlloccounter > maxnumit:
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print("autoPyLoT: Number of maximum iterations reached, stop iterative picking!")
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break
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print("autoPyLoT: Starting with iteration No. %d ..." % nlloccounter)
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picks = iteratepicker(wfdat, nllocfile, picks, badpicks, parameter)
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# write phases to NLLoc-phase file
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picksExport(picks, 'NLLoc', phasefile)
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# locate the event
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locate(nlloccall, ctrfile)
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print("autoPyLoT: Iteration No. %d finished." % nlloccounter)
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badpicks = []
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for key in picks:
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if picks[key]['P']['weight'] >= 4 or picks[key]['S']['weight'] >= 4:
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badpicks.append([key, picks[key]['P']['mpp']])
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print("autoPyLoT: After iteration No. %d: %d bad onsets found ..." % (nlloccounter, \
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len(badpicks)))
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if len(badpicks) == 0:
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print("autoPyLoT: No more bad onsets found, stop iterative picking!")
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break
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else:
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print("autoPyLoT: No NLLoc-location file available! Stop iteration!")
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##########################################################
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@ -195,14 +213,33 @@ def autoPyLoT(inputfile):
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else:
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# get theoretical P-onset times from NLLoc-location file
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locsearch = '%s/loc/%s.????????.??????.grid?.loc.hyp' % (nllocroot, nllocout)
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# get latest file if several are available
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nllocfile = max(glob.glob(locsearch), key=os.path.getctime)
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if os.path.isfile(nllocfile):
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picks = iteratepicker(wfdat, nllocfile, picks, badpicks, parameter)
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# write phases to NLLoc-phase file
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picksExport(picks, 'NLLoc', phasefile)
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# locate the event
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locate(nlloccall, ctrfile)
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maxnumit = 3 # maximum number of iterations
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if len(glob.glob(locsearch)) > 0:
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# get latest file if several are available
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nllocfile = max(glob.glob(locsearch), key=os.path.getctime)
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nlloccounter = 0
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while len(badpicks) > 0 and nlloccounter <= maxnumit:
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nlloccounter += 1
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if nlloccounter > maxnumit:
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print("autoPyLoT: Number of maximum iterations reached, stop iterative picking!")
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break
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print("autoPyLoT: Starting with iteration No. %d ..." % nlloccounter)
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picks = iteratepicker(wfdat, nllocfile, picks, badpicks, parameter)
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# write phases to NLLoc-phase file
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picksExport(picks, 'NLLoc', phasefile)
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# locate the event
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locate(nlloccall, ctrfile)
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print("autoPyLoT: Iteration No. %d finished." % nlloccounter)
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badpicks = []
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for key in picks:
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if picks[key]['P']['weight'] >= 4 or picks[key]['S']['weight'] >= 4:
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badpicks.append([key, picks[key]['P']['mpp']])
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print("autoPyLoT: After iteration No. %d: %d bad onsets found ..." % (nlloccounter, \
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len(badpicks)))
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if len(badpicks) == 0:
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print("autoPyLoT: No more bad onsets found, stop iterative picking!")
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break
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else:
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print("autoPyLoT: No NLLoc-location file available! Stop iteration!")
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##########################################################
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@ -6,8 +6,8 @@
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#main settings#
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/DATA/Insheim #rootpath# %project path
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EVENT_DATA/LOCAL #datapath# %data path
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2013.02_Insheim #database# %name of data base
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e0019.048.13 #eventID# %event ID for single event processing
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2015.10_Insheim #database# %name of data base
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e0011.280.15 #eventID# %event ID for single event processing
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/DATA/Insheim/STAT_INFO #invdir# %full path to inventory or dataless-seed file
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PILOT #datastructure#%choose data structure
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0 #iplot# %flag for plotting: 0 none, 1 partly, >1 everything
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@ -39,10 +39,10 @@ AUTOFOCMEC_AIC_HOS4_ARH.in #focmecin# %name of focmec input file co
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300 #Qp# %quality factor for P waves
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100 #Qs# %quality factor for S waves
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#common settings picker#
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15 #pstart# %start time [s] for calculating CF for P-picking
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60 #pstop# %end time [s] for calculating CF for P-picking
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15.0 #pstart# %start time [s] for calculating CF for P-picking
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60.0 #pstop# %end time [s] for calculating CF for P-picking
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-1.0 #sstart# %start time [s] relative to P-onset for calculating CF for S-picking
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7 #sstop# %end time [s] after P-onset for calculating CF for S-picking
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12.0 #sstop# %end time [s] after P-onset for calculating CF for S-picking
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2 20 #bpz1# %lower/upper corner freq. of first band pass filter Z-comp. [Hz]
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2 30 #bpz2# %lower/upper corner freq. of second band pass filter Z-comp. [Hz]
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2 15 #bph1# %lower/upper corner freq. of first band pass filter H-comp. [Hz]
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@ -95,8 +95,8 @@ ARH #algoS# %choose algorithm for S-onset
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3 #minAICSslope# %below this slope [counts/s] the initial S pick is rejected
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1.5 #minAICSSNR# %below this SNR the initial S pick is rejected
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#check duration of signal using envelope function#
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5 #minsiglength# %minimum required length of signal [s]
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1.8 #noisefactor# %noiselevel*noisefactor=threshold
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4 #minsiglength# %minimum required length of signal [s]
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1.5 #noisefactor# %noiselevel*noisefactor=threshold
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50 #minpercent# %required percentage of samples higher than threshold
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#check for spuriously picked S-onsets#
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2.0 #zfac# %P-amplitude must exceed at least zfac times RMS-S amplitude
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@ -800,6 +800,7 @@ def autopickstation(wfstream, pickparam):
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return picks
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def iteratepicker(wf, NLLocfile, picks, badpicks, pickparameter):
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'''
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Repicking of bad onsets. Uses theoretical onset times from NLLoc-location file.
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@ -816,8 +817,8 @@ def iteratepicker(wf, NLLocfile, picks, badpicks, pickparameter):
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'''
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print("#######################################################")
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print("autoPyLoT: Found bad onsets at station(s) %s, starting re-picking them ...") \
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% badpicks
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print("autoPyLoT: Found %d bad onsets at station(s) %s, starting re-picking them ...") \
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% (len(badpicks), badpicks)
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newpicks = {}
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for i in range(0, len(badpicks)):
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@ -838,32 +839,44 @@ def iteratepicker(wf, NLLocfile, picks, badpicks, pickparameter):
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# modify some picking parameters
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pstart_old = pickparameter.getParam('pstart')
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pstop_old = pickparameter.getParam('pstop')
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sstop_old = pickparameter.getParam('sstop')
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pickwinP_old = pickparameter.getParam('pickwinP')
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Precalcwin_old = pickparameter.getParam('Precalcwin')
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noisefactor_old = pickparameter.getParam('noisefactor')
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zfac_old = pickparameter.getParam('zfac')
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pickparameter.setParam(pstart=badpicks[i][1] - wf2pick[0].stats.starttime \
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- pickparameter.getParam('tlta'))
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pickparameter.setParam(pstop=pickparameter.getParam('pstart') + \
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(3 * pickparameter.getParam('tlta')))
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pickparameter.setParam(sstop=pickparameter.getParam('sstop') / 2)
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pickparameter.setParam(pickwinP=pickparameter.getParam('pickwinP') / 2)
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pickparameter.setParam(Precalcwin=pickparameter.getParam('Precalcwin') / 2)
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pickparameter.setParam(noisefactor=1.0)
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pickparameter.setParam(zfac=1.0)
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print("iteratepicker: The following picking parameters have been modified for iterative picking:")
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print("pstart: %fs => %fs" % (pstart_old, pickparameter.getParam('pstart')))
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print("pstop: %fs => %fs" % (pstop_old, pickparameter.getParam('pstop')))
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print("sstop: %fs => %fs" % (sstop_old, pickparameter.getParam('sstop')))
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print("pickwinP: %fs => %fs" % (pickwinP_old, pickparameter.getParam('pickwinP')))
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print("Precalcwin: %fs => %fs" % (Precalcwin_old, pickparameter.getParam('Precalcwin')))
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print("noisefactor: %f => %f" % (noisefactor_old, pickparameter.getParam('noisefactor')))
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print("zfac: %f => %f" % (zfac_old, pickparameter.getParam('zfac')))
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# repick station
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newpicks = autopickstation(wf2pick, pickparameter)
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# replace old dictionary with new one
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picks[badpicks[i][0]] = newpicks
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# reset temporary change of picking parameters
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print("iteratepicker: Resetting picking parameters ...")
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pickparameter.setParam(pstart=pstart_old)
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pickparameter.setParam(pstop=pstop_old)
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pickparameter.setParam(pickwinP=pickwinP_old)
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pickparameter.setParam(Precalcwin=Precalcwin_old)
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# reset temporary change of picking parameters
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print("iteratepicker: Resetting picking parameters ...")
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pickparameter.setParam(pstart=pstart_old)
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pickparameter.setParam(pstop=pstop_old)
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pickparameter.setParam(sstop=sstop_old)
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pickparameter.setParam(pickwinP=pickwinP_old)
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pickparameter.setParam(Precalcwin=Precalcwin_old)
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pickparameter.setParam(noisefactor=noisefactor_old)
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pickparameter.setParam(zfac=zfac_old)
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return picks
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@ -18,7 +18,7 @@ from matplotlib.widgets import MultiCursor
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from PySide.QtGui import QAction, QApplication, QComboBox, QDateTimeEdit, \
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QDialog, QDialogButtonBox, QDoubleSpinBox, QGroupBox, QGridLayout, \
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QIcon, QKeySequence, QLabel, QLineEdit, QMessageBox, QPixmap, QSpinBox, \
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QTabWidget, QToolBar, QVBoxLayout, QWidget
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QTabWidget, QToolBar, QVBoxLayout, QWidget, QPushButton, QFileDialog
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from PySide.QtCore import QSettings, Qt, QUrl, Signal, Slot
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from PySide.QtWebKit import QWebView
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from obspy import Stream, UTCDateTime
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@ -789,6 +789,7 @@ class PropertiesDlg(QDialog):
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self.tabWidget.addTab(OutputsTab(self), "Outputs")
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self.tabWidget.addTab(PhasesTab(self), "Phases")
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self.tabWidget.addTab(GraphicsTab(self), "Graphics")
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self.tabWidget.addTab(LocalisationTab(self), "Loc Tools")
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self.buttonBox = QDialogButtonBox(QDialogButtonBox.Ok |
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QDialogButtonBox.Apply |
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QDialogButtonBox.Close)
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@ -842,10 +843,14 @@ class InputsTab(PropTab):
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# get the full name of the actual user
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self.fullNameEdit = QLineEdit()
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self.fullNameEdit.setText(fulluser)
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try:
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self.fullNameEdit.setText(fulluser)
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except TypeError as e:
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self.fullNameEdit.setText(fulluser[0])
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# information about data structure
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dataroot = settings.value("data/dataRoot")
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curstructure = settings.value("data/Structure")
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dataDirLabel = QLabel("data root directory: ")
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self.dataDirEdit = QLineEdit()
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self.dataDirEdit.setText(dataroot)
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@ -857,6 +862,10 @@ class InputsTab(PropTab):
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self.structureSelect.addItems(DATASTRUCTURE.keys())
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dsind = findComboBoxIndex(self.structureSelect, curstructure)
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self.structureSelect.setCurrentIndex(dsind)
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layout = QGridLayout()
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layout.addWidget(dataDirLabel, 0, 0)
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layout.addWidget(self.dataDirEdit, 0, 1)
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@ -929,14 +938,60 @@ class LocalisationTab(PropTab):
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toolind = findComboBoxIndex(self.locToolComboBox, curtool)
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self.locToolComboBox.setCurrentIndex(toolind)
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curroot = settings.value("loc/tool", None)
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curroot = settings.value("%s/rootPath".format(curtool), None)
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curbin = settings.value("%s/binPath".format(curtool), None)
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self.rootlabel = QLabel("root directory")
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self.binlabel = QLabel("bin directory")
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self.rootedit = QLineEdit('')
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self.binedit = QLineEdit('')
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if curroot is not None:
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self.rootedit.setText(curroot)
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if curbin is not None:
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self.binedit.setText(curbin)
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rootBrowse = QPushButton('...', self)
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rootBrowse.clicked.connect(lambda: self.selectDirectory(self.rootedit))
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binBrowse = QPushButton('...', self)
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binBrowse.clicked.connect(lambda: self.selectDirectory(self.binedit))
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self.locToolComboBox.currentIndexChanged.connect(self.updateUi)
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self.updateUi()
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layout = QGridLayout()
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layout.addWidget(loctoollabel, 0, 0)
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layout.addWidget(self.locToolComboBox, 0, 1)
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layout.addWidget(self.rootlabel, 1, 0)
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layout.addWidget(self.rootedit, 1, 1)
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layout.addWidget(rootBrowse, 1, 2)
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layout.addWidget(self.binlabel, 2, 0)
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layout.addWidget(self.binedit, 2, 1)
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layout.addWidget(binBrowse, 2, 2)
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self.setLayout(layout)
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def updateUi(self):
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curtool = self.locToolComboBox.currentText()
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if curtool is not None:
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rootlabel = QLabel("{0} root dircetory".format(curtool))
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else:
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rootlabel = QLabel("root dircetory")
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rootlabel.setDisabled()
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self.rootlabel.setText("{0} root directory".format(curtool))
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self.binlabel.setText("{0} bin directory".format(curtool))
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def selectDirectory(self, edit):
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selected_directory = QFileDialog.getExistingDirectory()
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edit.setText(selected_directory)
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def getValues(self):
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loctool = self.locToolComboBox.currentText()
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values = {"%s/rootPath".format(loctool): self.rootedit.text(),
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"%s/binPath".format(loctool): self.binedit.text(),
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"loc/tool": loctool}
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return values
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class NewEventDlg(QDialog):
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