new package io.py which should contain all import and export routines written by ourselves, such as reading old PILOT phase and location information file; implementation of the readPILOTevent function; new routines in utils: createArrival will be split into two functions: createPick and createArrival; also planned: createOrigin, createAmplitude and createMagnitude as well as giving createEvent functionality
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170
pylot/core/read/io.py
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170
pylot/core/read/io.py
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#!/usr/bin/env python
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# -*- coding: utf-8 -*-
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import os
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import glob
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import scipy.io as sio
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import obspy.core.event as ope
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from obspy.core import UTCDateTime
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from pylot.core.util import getOwner, createPick, createArrival, createEvent
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def readPILOTEvent(phasfn=None, locfn=None, authority_id=None, **kwargs):
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"""
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readPILOTEvent - function
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Reads Matlab PHASES and LOC files written by Matlab versions of PILOT and
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converts the data into an ObsPy Event object which is returned to the
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calling program.
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:rtype : ~obspy.core.event.Event
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:param eventID:
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:param authority:
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:param kwargs:
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:param phasfn: filename of the old PILOT Matlab PHASES file
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:param locfn: filename of the old PILOT Matlab LOC file
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:return event: event object containing event and phase information
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"""
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sdir = os.path.split(phasfn)[0]
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if phasfn is not None and os.path.isfile(phasfn):
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phases = sio.loadmat(phasfn)
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phasctime = UTCDateTime(os.path.getmtime(phasfn))
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phasauthor = getOwner(phasfn)
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else:
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phases = None
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phasctime = None
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phasauthor = None
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if locfn is not None and os.path.isfile(locfn):
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loc = sio.loadmat(locfn)
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locctime = UTCDateTime(os.path.getmtime(locfn))
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locauthor = getOwner(locfn)
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else:
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loc = None
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locctime = None
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locauthor = None
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pickcinfo = ope.CreationInfo(agency_id=authority_id,
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author=phasauthor,
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creation_time=phasctime)
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loccinfo = ope.CreationInfo(agency_id=authority_id,
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author=locauthor,
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creation_time=locctime)
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np = 0
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try:
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eventNum = loc['ID'][0]
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# retrieve eventID for the actual database
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idsplit = eventNum.split('.')
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# retrieve date information
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julday = int(idsplit[1])
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year = int(idsplit[2])
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hour = int(loc['hh'])
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minute = int(loc['mm'])
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second = int(loc['ss'])
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if UTCDateTime(year=year+2000) < UTCDateTime.utcnow():
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year += 2000
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else:
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year += 1900
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eventDate = UTCDateTime(year=year, julday=julday, hour=hour,
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minute=minute, second=second)
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stations = [stat for stat in phases['stat'][0:-1:3]]
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eventid = 'loc/' + eventNum
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evresID = ope.ResourceIdentifier(id=eventid)
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evresID.convertIDToQuakeMLURI(authority_id=authority_id)
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event = ope.Event(resource_id=evresID)
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event.creation_info = loccinfo
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etype = ope.EventType('earthquake')
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event.event_type = etype
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for n, pick in enumerate(phases['Ptime']):
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kwargs = {'year':int(pick[0]),
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'month':int(pick[1]),
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'day':int(pick[2]),
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'hour':int(pick[3]),
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'minute':int(pick[4]),
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'second':int(str(pick[5]).split('.')[0]),
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'microsecond':int(str(pick[5]).split('.')[1][0:6])}
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spick = phases['Stime'][n]
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if spick[0] > 0:
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skwargs = {'year':int(spick[0]),
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'month':int(spick[1]),
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'day':int(spick[2]),
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'hour':int(spick[3]),
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'minute':int(spick[4]),
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'second':int(str(spick[5]).split('.')[0]),
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'microsecond':int(str(spick[5]).split('.')[1][0:6])}
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spicktime = UTCDateTime(**skwargs)
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else:
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spicktime = None
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ppicktime = UTCDateTime(**kwargs)
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for picktime, phase in [(ppicktime, 'P'), (spicktime, 'S')]:
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if phase == 'P':
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wffn = os.path.join([sdir, '{0}*{1}*'.format(stations[n], 'z')])
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else:
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wffn = os.path.join([sdir, '{0}*{1}*'.format(stations[n], '[ne]')])
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pick, arrival, np = createArrival(np, picktime, eventNum,
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stations[n], pickcinfo, phase,
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wffn, authority_id)
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event.picks.append(pick)
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origID = 'orig/' + genID
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origresID = ResourceIdentifier(id=origID)
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origresID.convertIDToQuakeMLURI(authority_id='BUG')
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origin = Origin()
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origin.resource_id = origresID
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otime = self.location[eventid]['Location']['Origin time']
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origin.time = UTCDateTime(otime)
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origin.creation_info = self.cinfo
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HW = self.location[eventid]['Location']['Hochwert']
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RW = self.location[eventid]['Location']['Rechtswert']
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LAT, LON = coordTrans(HW, RW, tosys=GPS)
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origin.latitude = LAT
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origin.longitude = LON
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origin.depth = 1000.
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origin.depth_type = OriginDepthType('operator assigned')
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origin.evaluation_mode = 'automatic'
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origin.arrivals.append(arrival)
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amplID = 'corrampl/' + genID
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amplresID = ResourceIdentifier(id=amplID)
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amplresID.convertIDToQuakeMLURI(authority_id='BUG')
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amplitude = Amplitude()
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amplitude.resource_id = amplresID
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amplitude.creation_info = self.cinfo
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amp = self.data[eventid][phase]['Amplitude']*1e-9
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amplitude.generic_amplitude = amp
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amplitude.unit = AmplitudeUnit('m/s')
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amplitude.magnitude_hint = 'Ml'
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amplitude.type = AmplitudeCategory('point')
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amplitude.pick_id = pickresID
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magnID = 'corrmag/' + genID
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magnresID = ResourceIdentifier(id=magnID)
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magnresID.convertIDToQuakeMLURI(authority_id='BUG')
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magnitude = Magnitude()
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magnitude.resource_id = magnresID
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magnitude.creation_info = self.cinfo
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magnitude.origin_id = origresID
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mag = self.location[eventid]['Ml']
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magnitude.mag = mag
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magnitude.magnitude_type = 'Ml'
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event = Event(resource_id=evresID)
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event.creation_info = self.cinfo
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etype = EventType('earthquake')
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event.event_type = etype
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edesc = EventDescription(text='Prosper Haniel (induced)')
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event.event_descriptions.append(edesc)
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event.picks.append(pick)
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event.origins.append(origin)
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event.magnitudes.append(magnitude)
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event.amplitudes.append(amplitude)
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except AttributeError, e:
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raise AttributeError('{0} - Matlab LOC file contain \
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insufficient data!'.format(e))
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@ -5,6 +5,8 @@ from pylot.core.util.errors import FormatError
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from pylot.core.util.layouts import layoutStationButtons
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from pylot.core.util.utils import fnConstructor
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from pylot.core.util.utils import createEvent
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from pylot.core.util.utils import getOwner
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from pylot.core.util.utils import createArrival
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from pylot.core.util.widgets import PickDlg
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from pylot.core.util.widgets import HelpForm
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from pylot.core.util.widgets import FilterOptionsDialog
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@ -10,4 +10,4 @@ class OptionsError(Exception):
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pass
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class FormatError(Exception):
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pass
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pass
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@ -2,8 +2,10 @@
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#
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# -*- coding: utf-8 -*-
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import os
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import pwd
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import re
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from obspy.core.event import *
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import obspy.core.event as ope
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def fnConstructor(s):
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return fn
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def createEvent(origintime, latitude, longitude, depth, **kwargs):
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evt = Event()
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evt = ope.Event()
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def createArrival(picknum, picktime, eventnum, station, cinfo, phase, wfname,
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authority_id):
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pickID = 'pick/' + eventnum + '/' + station + '/{0:3d}'.format(picknum)
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pickresID = ope.ResourceIdentifier(id=pickID)
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pickresID.convertIDToQuakeMLURI(authority_id=authority_id)
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pick = ope.Pick()
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pick.resource_id = pickresID
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pick.time = picktime
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pick.creation_info = cinfo
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pick.phase_hint = phase
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pick.waveform_id = ope.ResourceIdentifier(id=wfname, prefix='file:/')
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arriID = 'arrival/' + eventnum + '/' + station + '/{0}'.format(phase)
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arriresID = ope.ResourceIdentifier(id=arriID)
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arriresID.convertIDToQuakeMLURI(authority_id=authority_id)
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arrival = ope.Arrival()
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arrival.resource_id = arriresID
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arrival.creation_info = cinfo
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arrival.pick_id = pickresID
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arrival.phase = pick.phase_hint
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azi = self.location[eventid]['Backazimuth'] - 180
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arrival.azimuth = azi if azi > -180 else azi + 360
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arrival.distance = self.location[eventid]['Distance']['deg']
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def getOwner(fn):
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return pwd.getpwuid(os.stat(fn).st_uid).pw_name
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